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两种新热带 Epicharis 属(膜翅目,蜜蜂科,切叶蜂族)昆虫微卫星标记的分离与特征分析及在相关种中的通用性检测。

Isolation and characterization of microsatellite markers in two species of the neotropical Epicharis (Hymenoptera, Apidae, Centridini) genus and cross-amplification in related species.

机构信息

Departamento de Biologia Geral, Universidade Estadual de Londrina, Londrina, PR, Brazil.

Departamento de Genética e Biologia Evolutiva, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil.

出版信息

Mol Biol Rep. 2021 Feb;48(2):1977-1983. doi: 10.1007/s11033-020-06076-0. Epub 2021 Jan 21.

DOI:10.1007/s11033-020-06076-0
PMID:33479830
Abstract

Genetics can provide invaluable tools for management and conservation of bee populations, which are declining worldwide. Among these tools, microsatellite are very useful molecular markers for population analyses. The aim of this study was to isolate and characterize microsatellites for Epicharis (Anepicharis) dejeanii and Epicharis (Epicharis) nigrita, two Neotropical species of solitary bees, both exhibiting the habit of nesting in aggregations. Microsatellite loci were identified from two enriched genomic libraries. The characterization and analysis of loci were carried out using 35 females of E. dejeanii and 34 of E. nigrita. In total, we report the development of 12 microsatellite loci for E. dejeanii and 13 for E. nigrita. For E. dejeanii, all loci were polymorphic, the number of alleles per locus ranged from 2 to 12, averaging 8.7 and, observed and expected heterozygosity were 0.485 (range 0.229-0.857) and 0.633 (range 0.288-0.843), respectively. For E. nigrita, only nine out of 13 loci amplified were polymorphic, the number of alleles per locus ranged from 2 to 12, averaging 5.5. For this species, the observed and expected heterozygosity were 0.440 (range 0.118-0.676) and 0.545 (range 0.167-0.814), respectively. Cross-amplification of primers was successful in other Centridini species. The two sets of loci described for E. dejeanii and E. nigrita species are polymorphic and informative and show promising applicability for both population genetic approaches and relatedness on these and other Centridini species.

摘要

遗传学可以为管理和保护全球范围内数量下降的蜜蜂种群提供非常宝贵的工具。在这些工具中,微卫星是用于种群分析的非常有用的分子标记。本研究的目的是分离和鉴定两种新热带独居蜜蜂 Epicharis (Anepicharis) dejeanii 和 Epicharis (Epicharis) nigrita 的微卫星,它们都有群居筑巢的习性。从两个富集基因组文库中鉴定了微卫星位点。使用 35 只 E. dejeanii 雌性和 34 只 E. nigrita 对位点进行了特征描述和分析。总共报告了 12 个微卫星位点用于 E. dejeanii 和 13 个微卫星位点用于 E. nigrita。对于 E. dejeanii,所有位点均为多态性,每个位点的等位基因数从 2 到 12 不等,平均为 8.7,观察和预期杂合度分别为 0.485(范围为 0.229-0.857)和 0.633(范围为 0.288-0.843)。对于 E. nigrita,仅 13 个扩增的位点中的 9 个是多态性的,每个位点的等位基因数从 2 到 12 不等,平均为 5.5。对于该物种,观察和预期杂合度分别为 0.440(范围为 0.118-0.676)和 0.545(范围为 0.167-0.814)。引物的交叉扩增在其他 Centridini 物种中是成功的。为 E. dejeanii 和 E. nigrita 物种描述的这两组位点是多态性和信息丰富的,并且对于这两个物种以及其他 Centridini 物种的种群遗传方法和亲缘关系都具有很大的应用潜力。

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本文引用的文献

1
Construction of a genetic linkage map in man using restriction fragment length polymorphisms.利用限制性片段长度多态性构建人类遗传连锁图谱。
Am J Hum Genet. 1980 May;32(3):314-31.