Institute of Botany, University of Cologne, Cologne, Germany.
Department of Plant and Microbial Biology, University of Minnesota, St. Paul, MN, USA.
Mol Biol Evol. 2021 May 4;38(5):1820-1836. doi: 10.1093/molbev/msaa322.
During range expansion, edge populations are expected to face increased genetic drift, which in turn can alter and potentially compromise adaptive dynamics, preventing the removal of deleterious mutations and slowing down adaptation. Here, we contrast populations of the European subspecies Arabidopsis lyrata ssp. petraea, which expanded its Northern range after the last glaciation. We document a sharp decline in effective population size in the range-edge population and observe that nonsynonymous variants segregate at higher frequencies. We detect a 4.9% excess of derived nonsynonymous variants per individual in the range-edge population, suggesting an increase of the genomic burden of deleterious mutations. Inference of the fitness effects of mutations and modeling of allele frequencies under the explicit demographic history of each population predicts a depletion of rare deleterious variants in the range-edge population, but an enrichment for fixed ones, consistent with the bottleneck effect. However, the demographic history of the range-edge population predicts a small net decrease in per-individual fitness. Consistent with this prediction, the range-edge population is not impaired in its growth and survival measured in a common garden experiment. We further observe that the allelic diversity at the self-incompatibility locus, which ensures strict outcrossing and evolves under negative frequency-dependent selection, has remained unchanged. Genomic footprints indicative of selective sweeps are broader in the Northern population but not less frequent. We conclude that the outcrossing species A. lyrata ssp. petraea shows a strong resilience to the effect of range expansion.
在范围扩张过程中,边缘种群预计将面临更大的遗传漂变,这反过来又可能改变并潜在地损害适应动态,阻止有害突变的消除并减缓适应速度。在这里,我们对比了欧洲亚种拟南芥 lyrata ssp. petraea 的种群,该亚种在末次冰期后扩展了其北部范围。我们记录了边缘种群有效种群数量的急剧下降,并观察到非同义变体以更高的频率分离。我们在边缘种群中检测到每个个体 4.9%的衍生非同义变体过剩,表明有害突变的基因组负担增加。对突变适应效应的推断和在每个种群明确的人口历史下等位基因频率的建模预测,边缘种群中稀有有害变异的消耗,但固定变异的富集,与瓶颈效应一致。然而,边缘种群的人口历史预测其个体适合度会略有净下降。与这一预测一致,在一个共同花园实验中,边缘种群的生长和存活没有受到损害。我们进一步观察到,在自交不亲和基因座的等位基因多样性保持不变,该基因座确保了严格的异交,并在负频率依赖选择下进化。在北部种群中,指示选择清除的基因组足迹更宽,但不那么频繁。我们的结论是,异交物种拟南芥 lyrata ssp. petraea 对范围扩张的影响具有很强的恢复力。