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(鹀科: )的完整线粒体基因组序列

Complete mitochondrial genome sequence of (Emberizidae: ).

作者信息

Lee Mu-Yeong, Jeon Hey Sook, An Junghwa

机构信息

Animal Resources Division, National Institute of Biological Resources, Incheon, Republic of Korea.

出版信息

Mitochondrial DNA B Resour. 2017 Feb 16;2(1):111-112. doi: 10.1080/23802359.2017.1289351.

DOI:10.1080/23802359.2017.1289351
PMID:33490442
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7800306/
Abstract

The Japanese yellow bunting () is considered to be an endangered species. Here, the complete mitochondrial genome of (16,797 bp in length) was determined. The genome consists of 37 genes (13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNA genes) and one control region (D-loop), and so is highly similar in architecture to the typical vertebrate mtDNA genome. The base composition of the mtDNA was A (29.9%), C (32.6%), G (14.5%), and T (23.0%), so the percentage of A and T (52.9%) was slightly higher than that of G and C. All the genes in were encoded on the H-strand, except for the genes for the subunit and eight tRNAs, which were encoded on the L-stand. Phylogenetic analysis using Emberizidae mitogenomes revealed that was grouped into the family Emberizidae and that is the most closely related species.

摘要

日本黄鹀被认为是一种濒危物种。在此,测定了日本黄鹀完整的线粒体基因组(长度为16,797 bp)。该基因组由37个基因(13个蛋白质编码基因、2个核糖体RNA基因和22个转运RNA基因)和一个控制区(D环)组成,其结构与典型的脊椎动物线粒体DNA基因组高度相似。线粒体DNA的碱基组成为A(29.9%)、C(32.6%)、G(14.5%)和T(23.0%),因此A和T的百分比(52.9%)略高于G和C。日本黄鹀的所有基因都在重链上编码,除了亚基基因和8个tRNA基因,它们在轻链上编码。使用鹀科线粒体基因组进行的系统发育分析表明,日本黄鹀被归入鹀科,并且是与其关系最密切的物种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fdd/7800306/12356c3c9f67/TMDN_A_1289351_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fdd/7800306/12356c3c9f67/TMDN_A_1289351_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fdd/7800306/12356c3c9f67/TMDN_A_1289351_F0001_B.jpg

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本文引用的文献

1
Mitochondrial genome of the Emberiza jankowskii (Emberizidae: Emberiza).栗斑腹鹀(鹀科:鹀属)的线粒体基因组
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Jul;27(4):2458-9. doi: 10.3109/19401736.2015.1033696. Epub 2015 Apr 14.
2
The complete mitochondrial genome of the yellow-browed bunting, Emberiza chrysophrys (Passeriformes: Emberizidae), and phylogenetic relationships within the genus Emberiza.黄眉鹀(Emberiza chrysophrys,雀形目:鹀科)的线粒体全基因组及鹀属内的系统发育关系。
J Genet. 2014 Dec;93(3):699-707. doi: 10.1007/s12041-014-0428-2.
3
Mitochondrial genome of Emberiza elegans (Emberizidae: Emberiza).
黄眉鹀(鹀科:鹀属)的线粒体基因组
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 May;27(3):1793-4. doi: 10.3109/19401736.2014.963816. Epub 2014 Sep 29.
4
Mitochondrial genome of the Emberiza cioides (Emberizidae: Emberiza).三道眉草鹀(鹀科:鹀属)的线粒体基因组
Mitochondrial DNA. 2015 Apr;26(2):295-6. doi: 10.3109/19401736.2013.825782. Epub 2013 Sep 19.
5
Mitochondrial genome of the Emberiza aureola (Emberizidae: Emberiza).黄胸鹀(鹀科:鹀属)的线粒体基因组
Mitochondrial DNA. 2015 Feb;26(1):121-2. doi: 10.3109/19401736.2013.814112. Epub 2013 Jul 31.
6
Mitochondrial genome of the Emberiza rutila (Emberizidae: Emberiza).黄胸鹀(鹀科:鹀属)的线粒体基因组
Mitochondrial DNA. 2014 Oct;25(5):359-60. doi: 10.3109/19401736.2013.803093. Epub 2013 Jul 2.
7
Mitochondrial genome of the Emberiza rustica (Emberizidae: Emberiza).三道眉草鹀(鹀科:鹀属)的线粒体基因组
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8
Mitochondrial genome of the black-faced bunting (Emberiza spodocephala).黑脸鹀(Emberiza spodocephala)的线粒体基因组。
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9
Complete mitochondrial genome of the Tristram's Bunting, Emberiza tristrami (Aves: Passeriformes): the first representative of the family Emberizidae with six boxes in the central conserved domain II of control region.三道眉草鹀(Emberiza tristrami)(雀形目:鹀科)的完整线粒体基因组:鹀科中首个控制区中央保守结构域II含有六个框的代表。
Mitochondrial DNA. 2013 Dec;24(6):648-50. doi: 10.3109/19401736.2013.772165. Epub 2013 Mar 25.
10
Mitochondrial genome of the Emberiza pusilla (Emberizidae: Emberiza).栗鹀(鹀科:鹀属)的线粒体基因组
Mitochondrial DNA. 2013 Aug;24(4):382-4. doi: 10.3109/19401736.2013.763238. Epub 2013 Feb 7.