CCMP1328菌株完整质体基因组的特征分析
Characterization of the complete plastid genome of strain CCMP1328.
作者信息
Bi Guiqi
机构信息
Key Laboratory of Marine Genetics and Breeding (OUC), Ministry of Education, Qingdao, China.
College of Marine Life Sciences, Ocean University of China, Qingdao, China.
出版信息
Mitochondrial DNA B Resour. 2017 Jul 31;2(2):489-490. doi: 10.1080/23802359.2017.1361358.
In this study, the complete plastid genome of strain CCMP1328 was recovered through Illumina sequencing data. This complete plastid genome of was 220,483 bp in length and contained a pair of IR regions (4604 bp). The pt genome of encoded 234 genes including 199 protein-coding genes, 29 tRNA genes, one tmRNA, and six ribosomal RNA genes in IR regions. The overall GC content of cp genome is 30.4%. By phylogenetic analysis using 18S DNA fragments through NJ method, strain CCMP1328 was grouped in the cluster without further distinction. This complete plastid genomes can be subsequently used for evolution studies of red algae and provide valuable insight into dynamic evolution of group II introns.
在本研究中，通过Illumina测序数据获得了菌株CCMP1328的完整质体基因组。该菌株的完整质体基因组长度为220,483 bp，包含一对反向重复区域（4604 bp）。该菌株的质体基因组编码234个基因，包括199个蛋白质编码基因、29个tRNA基因、一个tmRNA和6个位于反向重复区域的核糖体RNA基因。该叶绿体基因组的总体GC含量为30.4%。通过使用18S DNA片段通过邻接法进行系统发育分析，菌株CCMP1328被归入该簇中，没有进一步的区分。这个完整的质体基因组随后可用于红藻的进化研究，并为II类内含子的动态进化提供有价值的见解。
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