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菊科(菊科)的完整叶绿体基因组及系统发育分析。

Complete chloroplast genome of (Asteraceae) and phylogenetic analysis.

作者信息

Wang Jun, He Rui, Zhang Huixuan, Hu Yanping, Wang Jianke, Wang Li, Li Yi

机构信息

Qinghai Key Laboratory of Qinghai-Tibet Plateau Biological Resources, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China.

College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.

出版信息

Mitochondrial DNA B Resour. 2021 Jan 5;6(1):8-9. doi: 10.1080/23802359.2020.1845108.

DOI:10.1080/23802359.2020.1845108
PMID:33490585
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7801092/
Abstract

Raab-Straube is a small perennial and polycarpic herb that is distributed on the rocky slopes of the Qinghai-Tibetan plateau (QTP) at an altitude of 3700-5400 meters. It has a chloroplast genome structure similar to that of other species of . It is 152,102 bp in size, including a large single-copy (LSC) region of 83,450 bp, a small single-copy (SSC) region of 18,286 bp and a pair of inverted repeats (IRs) of 25,183 bp. The chloroplast genome of encodes 113 genes, containing 80 protein-coding genes (PCGs), 29 tRNA and four rRNA genes. Phylogenetic analysis shows that is clustered with and .

摘要

拉布-施特劳贝是一种小型多年生多次结果的草本植物,分布于青藏高原海拔3700-5400米的岩石山坡上。它具有与其他物种相似的叶绿体基因组结构。其大小为152,102 bp,包括一个83,450 bp的大单拷贝(LSC)区域、一个18,286 bp的小单拷贝(SSC)区域和一对25,183 bp的反向重复序列(IRs)。[物种名称]的叶绿体基因组编码113个基因,包括80个蛋白质编码基因(PCGs)、29个tRNA和4个rRNA基因。系统发育分析表明,[物种名称]与[物种名称]和[物种名称]聚类在一起。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5521/7801092/cebc8c75f49b/TMDN_A_1845108_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5521/7801092/cebc8c75f49b/TMDN_A_1845108_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5521/7801092/cebc8c75f49b/TMDN_A_1845108_F0001_B.jpg

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本文引用的文献

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Mol Phylogenet Evol. 2019 Dec;141:106613. doi: 10.1016/j.ympev.2019.106613. Epub 2019 Sep 13.
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GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
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Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees.
交互式生命树(iTOL)v3:用于展示和注释系统发育树及其他树状图的在线工具。
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