• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

对养殖和人为引入对普遍存在的海藻裙带菜的影响进行全基因组研究。

A genome-wide investigation of the effect of farming and human-mediated introduction on the ubiquitous seaweed Undaria pinnatifida.

机构信息

Department of Biological Sciences, Sungkyunkwan University, Suwon, Korea.

Aquaculture Management Division, National Institute of Fisheries Science, Busan, South Korea.

出版信息

Nat Ecol Evol. 2021 Mar;5(3):360-368. doi: 10.1038/s41559-020-01378-9. Epub 2021 Jan 25.

DOI:10.1038/s41559-020-01378-9
PMID:33495590
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7929912/
Abstract

Human activity is an important driver of ecological and evolutionary change on our planet. In particular, domestication and biological introductions have important and long-lasting effects on species' genomic architecture and diversity. However, genome-wide analysis of independent domestication and introduction events within a single species has not previously been performed. The Pacific kelp Undaria pinnatifida provides such an opportunity because it has been cultivated in its native range in Northeast Asia but also introduced to four other continents in the past 50 years. Here we present the results of a genome-wide analysis of natural, cultivated and introduced populations of U. pinnatifida to elucidate human-driven evolutionary change. We demonstrate that these three categories of origin can be distinguished at the genome level, reflecting the combined influence of neutral (demography and migration) and non-neutral (selection) processes.

摘要

人类活动是地球生态和进化变化的重要驱动因素。特别是,驯化和生物引种对物种的基因组结构和多样性具有重要而持久的影响。然而,以前没有在一个单一物种内对独立的驯化和引种事件进行全基因组分析。太平洋巨藻裙带菜提供了这样一个机会,因为它在其东北亚的原生范围内被栽培,但在过去 50 年中也被引入到其他四个大陆。在这里,我们呈现了对裙带菜自然种群、栽培种群和引种种群的全基因组分析结果,以阐明人类驱动的进化变化。我们证明,这三个起源类别可以在基因组水平上区分开来,反映了中性(人口和迁移)和非中性(选择)过程的综合影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/b4d0e11af791/41559_2020_1378_Fig8_ESM.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/c855728df94f/41559_2020_1378_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/e97246bec913/41559_2020_1378_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/29fc30010657/41559_2020_1378_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/2c7ea69ceac8/41559_2020_1378_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/127ff8e34163/41559_2020_1378_Fig5_ESM.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/04ae3f840b0e/41559_2020_1378_Fig6_ESM.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/ee5930241f9c/41559_2020_1378_Fig7_ESM.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/b4d0e11af791/41559_2020_1378_Fig8_ESM.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/c855728df94f/41559_2020_1378_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/e97246bec913/41559_2020_1378_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/29fc30010657/41559_2020_1378_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/2c7ea69ceac8/41559_2020_1378_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/127ff8e34163/41559_2020_1378_Fig5_ESM.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/04ae3f840b0e/41559_2020_1378_Fig6_ESM.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/ee5930241f9c/41559_2020_1378_Fig7_ESM.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3663/7929912/b4d0e11af791/41559_2020_1378_Fig8_ESM.jpg

相似文献

1
A genome-wide investigation of the effect of farming and human-mediated introduction on the ubiquitous seaweed Undaria pinnatifida.对养殖和人为引入对普遍存在的海藻裙带菜的影响进行全基因组研究。
Nat Ecol Evol. 2021 Mar;5(3):360-368. doi: 10.1038/s41559-020-01378-9. Epub 2021 Jan 25.
2
Shading by giant kelp canopy can restrict the invasiveness of Undaria pinnatifida (Laminariales, Phaeophyceae).巨型海带树冠的遮荫作用可以限制裙带菜(海带目,褐藻纲)的入侵性。
J Phycol. 2023 Jun;59(3):552-569. doi: 10.1111/jpy.13330. Epub 2023 Apr 13.
3
The invasive kelp Undaria pinnatifida (Laminariales, Ochrophyta) along the north coast of Portugal: distribution model versus field observations.葡萄牙北部沿海的入侵性大型褐藻昆布(墨角藻目,褐藻门):分布模型与实地观测。
Mar Pollut Bull. 2014 Jul 15;84(1-2):363-5. doi: 10.1016/j.marpolbul.2014.05.038. Epub 2014 Jun 6.
4
Population genomics of the introduced and cultivated Pacific kelp : Marinas-not farms-drive regional connectivity and establishment in natural rocky reefs.引进和养殖的太平洋海带的群体基因组学:码头而非养殖场推动区域连通性及在天然岩礁中的定殖。
Evol Appl. 2018 Jun 14;11(9):1582-1597. doi: 10.1111/eva.12647. eCollection 2018 Oct.
5
[Introduction and establishment processes of marine species: a study case with the Japanese brown kelp Undaria pinnatifida].[海洋物种的引入与建立过程:以日本褐藻裙带菜为例的研究]
J Soc Biol. 2007;201(3):259-66. doi: 10.1051/jbio:2007037.
6
marching on; late arrival in the Republic of Ireland.继续前进;抵达爱尔兰共和国较晚。
J Appl Phycol. 2017;29(2):1107-1114. doi: 10.1007/s10811-016-0985-2. Epub 2016 Oct 26.
7
A method to establish an "immortalized F " sporophyte population in the economic brown alga Undaria pinnatifida (Laminariales: Alariaceae).建立经济褐藻裙带菜(翅藻目:翅藻科)“永生 F 孢子体”群体的方法。
J Phycol. 2020 Dec;56(6):1748-1753. doi: 10.1111/jpy.13066. Epub 2020 Oct 27.
8
Physiological and ultrastructural responses of the brown seaweed Undaria pinnatifida to triphenyltin chloride (TPTCL) stress.褐藻裙带菜对三苯基锡(TPTCL)胁迫的生理和超微结构响应。
Mar Pollut Bull. 2020 Apr;153:110978. doi: 10.1016/j.marpolbul.2020.110978. Epub 2020 Feb 17.
9
Proteins extracted from seaweed and their potential uses as foods and nutraceuticals.从海藻中提取的蛋白质及其作为食品和营养保健品的潜在用途。
Crit Rev Food Sci Nutr. 2022;62(22):6187-6203. doi: 10.1080/10408398.2021.1898334. Epub 2021 Mar 11.
10
Removal treatments alter the recruitment dynamics of a global marine invader - Implications for management feasibility.去除处理改变了全球海洋入侵物种的招募动态 - 对管理可行性的影响。
Mar Environ Res. 2018 Sep;140:322-331. doi: 10.1016/j.marenvres.2018.06.022. Epub 2018 Jul 6.

引用本文的文献

1
Analysis and Risk Assessment of Total Iodine Content in Edible Seaweeds in South Korea.韩国可食用海藻中总碘含量的分析与风险评估
Foods. 2025 Aug 19;14(16):2865. doi: 10.3390/foods14162865.
2
Scaffolded and annotated nuclear and organelle genomes of the North American brown alga .北美褐藻的支架式和注释核基因组及细胞器基因组
Front Genet. 2025 May 14;16:1494480. doi: 10.3389/fgene.2025.1494480. eCollection 2025.
3
Genome Evolution of Two Intertidal Sargassum Species (S. fusiforme and S. thunbergii) and Their Response to Abiotic Stressors.

本文引用的文献

1
The Evolution of an Invasive Plant, L. ('Johnsongrass').一种入侵植物黑高粱(学名:Sorghum halepense (L.) Pers.)的进化
Front Genet. 2020 May 14;11:317. doi: 10.3389/fgene.2020.00317. eCollection 2020.
2
First Genome of the Brown Alga : Chromosome-Level Assembly Using PacBio and Hi-C Technologies.褐藻的首个基因组:利用PacBio和Hi-C技术进行染色体水平的组装
Front Genet. 2020 Feb 28;11:140. doi: 10.3389/fgene.2020.00140. eCollection 2020.
3
Genome-Wide Patterns of Population Structure and Linkage Disequilibrium in Farmed Nile Tilapia ().
两种潮间带马尾藻物种(羊栖菜和鼠尾藻)的基因组进化及其对非生物胁迫的响应
Genome Biol Evol. 2025 Apr 30;17(5). doi: 10.1093/gbe/evaf084.
4
Presence of vitamin B metabolism in the last common ancestor of land plants.在陆地植物的最后共同祖先中存在维生素 B 代谢。
Philos Trans R Soc Lond B Biol Sci. 2024 Nov 18;379(1914):20230354. doi: 10.1098/rstb.2023.0354. Epub 2024 Sep 30.
5
Genome editing in macroalgae: advances and challenges.大型藻类中的基因组编辑:进展与挑战
Front Genome Ed. 2024 Mar 6;6:1380682. doi: 10.3389/fgeed.2024.1380682. eCollection 2024.
6
The sugar kelp Saccharina latissima I: recent advances in a changing climate.大型褐藻巨藻 Saccharina latissima I:气候变化下的最新进展。
Ann Bot. 2024 Mar 8;133(1):183-212. doi: 10.1093/aob/mcad173.
7
The Draft Genome of the "Golden Tide" Seaweed, Characterization and Comparative Analysis.“金潮”海藻基因组草案:特征与比较分析。
Genes (Basel). 2023 Oct 21;14(10):1969. doi: 10.3390/genes14101969.
8
A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera).巨藻(Macrocystis pyrifera)有脚手架和注释的参考基因组。
BMC Genomics. 2023 Sep 13;24(1):543. doi: 10.1186/s12864-023-09658-x.
9
Genome-Wide Identification and Analysis of the Aureochrome Gene Family in and a Comparative Analysis with Six Other Algae.金黄藻中金黄藻色素基因家族的全基因组鉴定与分析以及与其他六种藻类的比较分析。
Plants (Basel). 2022 Aug 11;11(16):2088. doi: 10.3390/plants11162088.
10
The Cell Wall Polysaccharides Biosynthesis in Seaweeds: A Molecular Perspective.海藻细胞壁多糖的生物合成:分子视角
Front Plant Sci. 2022 May 10;13:902823. doi: 10.3389/fpls.2022.902823. eCollection 2022.
养殖尼罗罗非鱼群体结构和连锁不平衡的全基因组模式() 。 (注:括号内原文有缺失内容)
Front Genet. 2019 Sep 4;10:745. doi: 10.3389/fgene.2019.00745. eCollection 2019.
4
Sequencing of Chinese castor lines reveals genetic signatures of selection and yield-associated loci.中国蓖麻品系的测序揭示了选择和产量相关基因座的遗传特征。
Nat Commun. 2019 Jul 31;10(1):3418. doi: 10.1038/s41467-019-11228-3.
5
Key aspects of the iodine metabolism in brown algae: a brief critical review.褐藻碘代谢的关键方面:简要的批判性回顾。
Metallomics. 2019 Apr 17;11(4):756-764. doi: 10.1039/c8mt00327k.
6
Detecting the True Extent of Introgression during Anthropogenic Hybridization.检测人为杂交过程中的真实渗入程度。
Trends Ecol Evol. 2019 Apr;34(4):315-326. doi: 10.1016/j.tree.2018.12.013. Epub 2019 Jan 14.
7
Population genomics of the introduced and cultivated Pacific kelp : Marinas-not farms-drive regional connectivity and establishment in natural rocky reefs.引进和养殖的太平洋海带的群体基因组学:码头而非养殖场推动区域连通性及在天然岩礁中的定殖。
Evol Appl. 2018 Jun 14;11(9):1582-1597. doi: 10.1111/eva.12647. eCollection 2018 Oct.
8
High-density SNP-based QTL mapping and candidate gene screening for yield-related blade length and width in Saccharina japonica (Laminariales, Phaeophyta).基于高密度 SNP 的产量相关叶片长度和宽度的 QTL 定位和候选基因筛选在紫菜(红藻门,褐藻)中。
Sci Rep. 2018 Sep 11;8(1):13591. doi: 10.1038/s41598-018-32015-y.
9
Marine invasions enter the genomic era: three lessons from the past, and the way forward.海洋生物入侵进入基因组时代:从过去吸取的三个教训及未来方向。
Curr Zool. 2016 Dec;62(6):629-642. doi: 10.1093/cz/zow053. Epub 2016 Apr 26.
10
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.13 种栽培稻和野生稻近缘种的基因组揭示了稻属的遗传保守性、转化和创新性。
Nat Genet. 2018 Feb;50(2):285-296. doi: 10.1038/s41588-018-0040-0. Epub 2018 Jan 22.