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异手性核酸电路

Heterochiral Nucleic Acid Circuits.

作者信息

Kabza Adam M, Young Brian E, Kundu Nandini, Sczepanski Jonathan T

机构信息

Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States.

出版信息

Emerg Top Life Sci. 2019 Nov;3(5):501-506. doi: 10.1042/etls20190102. Epub 2019 Aug 28.

Abstract

The programmability of DNA/RNA-based molecular circuits provides numerous opportunities in the field of synthetic biology. However, the stability of nucleic acids remains a major concern when performing complex computations in biological environments. Our solution to this problem is L-(deoxy)ribose nucleic acids (L-DNA/RNA), which are mirror images (i.e. enantiomers) of natural D-nucleotides. L-oligonucleotides have the same physical and chemical properties as their natural counterparts, yet they are completely invisible to the stereospecific environment of biology. We recently reported a novel strand-displacement methodology for transferring sequence information between oligonucleotide enantiomers (which are incapable of base pairing with each other), enabling bio-orthogonal L-DNA/RNA circuits to be easily interfaced with living systems. In this perspective, we summarize these so-called "heterochiral" circuits, provide a viewpoint on their potential applications in synthetic biology, and discuss key problems that must be solved before achieving the ultimate goal of engineering complex and reliable functionality.

摘要

基于DNA/RNA的分子电路的可编程性在合成生物学领域提供了众多机会。然而,在生物环境中进行复杂计算时,核酸的稳定性仍然是一个主要问题。我们对这个问题的解决方案是L-(脱氧)核糖核酸(L-DNA/RNA),它们是天然D-核苷酸的镜像(即对映体)。L-寡核苷酸与其天然对应物具有相同的物理和化学性质,但它们对生物学的立体特异性环境完全不可见。我们最近报道了一种用于在寡核苷酸对映体(它们彼此不能碱基配对)之间传递序列信息的新型链置换方法,使生物正交的L-DNA/RNA电路能够轻松地与生命系统连接。从这个角度出发,我们总结了这些所谓的“异手性”电路,对它们在合成生物学中的潜在应用提出了观点,并讨论了在实现工程化复杂且可靠功能的最终目标之前必须解决的关键问题。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce43/7832003/ff7ec66f0e91/nihms-1637206-f0001.jpg

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本文引用的文献

1
Mirror-Image Oligonucleotides: History and Emerging Applications.镜像寡核苷酸:历史与新兴应用。
Chemistry. 2019 Jun 18;25(34):7981-7990. doi: 10.1002/chem.201900149. Epub 2019 Apr 26.
4
Principles and Applications of Nucleic Acid Strand Displacement Reactions.核酸链置换反应的原理及应用
Chem Rev. 2019 May 22;119(10):6326-6369. doi: 10.1021/acs.chemrev.8b00580. Epub 2019 Feb 4.
5
Bioconjugated Oligonucleotides: Recent Developments and Therapeutic Applications.生物共轭寡核苷酸:最新进展与治疗应用。
Bioconjug Chem. 2019 Feb 20;30(2):366-383. doi: 10.1021/acs.bioconjchem.8b00761. Epub 2019 Jan 29.
7
A molecular multi-gene classifier for disease diagnostics.一种用于疾病诊断的分子多基因分类器。
Nat Chem. 2018 Jul;10(7):746-754. doi: 10.1038/s41557-018-0056-1. Epub 2018 Apr 30.
8
Heterochiral DNA Strand-Displacement Circuits.手性 DNA 链置换电路。
J Am Chem Soc. 2017 Dec 13;139(49):17715-17718. doi: 10.1021/jacs.7b10038. Epub 2017 Dec 1.
9
Mirror-image polymerase chain reaction.镜像聚合酶链反应
Cell Discov. 2017 Oct 17;3:17037. doi: 10.1038/celldisc.2017.37. eCollection 2017.

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