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急性肾损伤潜在基因和微小RNA生物标志物的鉴定

Identification of Potential Gene and MicroRNA Biomarkers of Acute Kidney Injury.

作者信息

Wang Si-Yang, Gao Jie, Song Yu-Huan, Cai Guang-Yan, Chen Xiang-Mei

机构信息

Department of Nephrology, The First Medical Centre, Chinese PLA General Hospital, Chinese PLA Institute of Nephrology, State Key Laboratory of Kidney Diseases, National Clinical Research Center for Kidney Diseases, Beijing 100853, China.

953th Hospital, Shigatse Branch, Xinqiao Hospital, Army Medical University (Third Military Medical University), Shigatse 857000, China.

出版信息

Biomed Res Int. 2021 Jan 8;2021:8834578. doi: 10.1155/2021/8834578. eCollection 2021.

Abstract

Acute kidney injury (AKI) is a disease that seriously endangers human health. At present, AKI lacks effective treatment methods, so it is particularly important to find effective treatment measures and targets. Bioinformatics analysis has become an important method to identify significant processes of disease occurrence and development. In this study, we analyzed the public expression profile with bioinformatics analysis to identify differentially expressed genes (DEGs) in two types of common AKI models (ischemia-reperfusion injury and cisplatin). DEGs were predicted in four commonly used microRNA databases, and it was found that miR-466 and miR-709 may play important roles in AKI. Then, we found key nodes through protein-protein interaction (PPI) network analysis and subnetwork analysis. Finally, by detecting the expression levels in the renal tissues of the two established AKI models, we found that Myc, Mcm5, E2f1, Oip5, Mdm2, E2f8, miR-466, and miR-709 may be important genes and miRNAs in the process of AKI damage repair. The findings of our study reveal some candidate genes, miRNAs, and pathways potentially involved in the molecular mechanisms of AKI. These data improve the current understanding of AKI and provide new insight for AKI research and treatment.

摘要

急性肾损伤(AKI)是一种严重危害人类健康的疾病。目前,AKI缺乏有效的治疗方法,因此寻找有效的治疗措施和靶点尤为重要。生物信息学分析已成为识别疾病发生发展重要过程的一种重要方法。在本研究中,我们通过生物信息学分析对公开的表达谱进行分析,以识别两种常见AKI模型(缺血再灌注损伤和顺铂)中的差异表达基因(DEG)。在四个常用的微小RNA数据库中预测DEG,发现miR-466和miR-709可能在AKI中发挥重要作用。然后,我们通过蛋白质-蛋白质相互作用(PPI)网络分析和子网分析找到关键节点。最后,通过检测两个已建立的AKI模型肾组织中的表达水平,我们发现Myc、Mcm5、E2f1、Oip5、Mdm2、E2f8、miR-466和miR-709可能是AKI损伤修复过程中的重要基因和微小RNA。我们的研究结果揭示了一些可能参与AKI分子机制的候选基因、微小RNA和通路。这些数据增进了目前对AKI的理解,并为AKI的研究和治疗提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1415/7810567/21dc6add81e2/BMRI2021-8834578.001.jpg

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