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荔枝霜疫霉基因组序列数据,一种引起荔枝霜霉病的卵菌病原体。

Genome Sequence Data of , an Oomycete Pathogen Causing Litchi Downy Blight.

机构信息

Key Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests, Ministry of Education, College of Plant Protection, Hainan University, Haikou 570228, China.

Fujian University Key Laboratory for Plant-Microbe Interaction, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.

出版信息

Mol Plant Microbe Interact. 2021 Jun;34(6):707-710. doi: 10.1094/MPMI-11-20-0303-A. Epub 2021 Jul 7.

Abstract

is an oomycete pathogen that exclusively infects litchi, with infection stages affecting a broad range of tissues. In this study, we obtained a near chromosome-level genome assembly of ZL2018 from China using Oxford Nanopore Technologies long-read sequencing and Illumina short-read sequencing. The genome assembly was 64.15 Mb in size and consisted of 81 contigs with an N of 1.43 Mb and a maximum length of 4.74 Mb. Excluding 34.67% of repeat sequences, 14,857 protein-coding genes were identified, among which 14,447 genes were annotated. We also predicted 306 candidate RxLR effectors in the assembly. The high-quality genome assembly and annotation resources reported in this study will provide new insight into the infection mechanisms of .[Formula: see text] The author(s) have dedicated the work to the public domain under the Creative Commons CC0 "No Rights Reserved" license by waiving all of his or her rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law. 2021.

摘要

是一种卵菌病原体,专门感染荔枝,感染阶段影响广泛的组织。在这项研究中,我们使用 Oxford Nanopore Technologies 长读测序和 Illumina 短读测序从中国获得了 ZL2018 的近乎染色体水平的基因组组装。基因组组装大小为 64.15Mb,由 81 个 contigs 组成,N 为 1.43Mb,最大长度为 4.74Mb。排除 34.67%的重复序列后,鉴定出 14857 个蛋白质编码基因,其中 14447 个基因被注释。我们还预测了组装体中的 306 个候选 RxLR 效应物。本研究中报告的高质量基因组组装和注释资源将为 [Formula: see text] 的感染机制提供新的见解。作者通过放弃其在全球范围内根据版权法享有的作品的所有权利,包括相关和相邻权利,将作品贡献给公共领域,适用法律允许的最大范围。2021 年。

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