Hameed Shilan S, Hassan Rohayanti, Hassan Wan Haslina, Muhammadsharif Fahmi F, Latiff Liza Abdul
Computer Systems and Networks (CSN), Malaysia-Japan International Institute of Technology (MJIIT), Universiti Teknologi Malaysia, Kuala Lumpur, Malaysia.
Directorate of Information Technology, Koya University, Koya, Kurdistan Region-F.R., Iraq.
PLoS One. 2021 Jan 28;16(1):e0246039. doi: 10.1371/journal.pone.0246039. eCollection 2021.
The selection and classification of genes is essential for the identification of related genes to a specific disease. Developing a user-friendly application with combined statistical rigor and machine learning functionality to help the biomedical researchers and end users is of great importance. In this work, a novel stand-alone application, which is based on graphical user interface (GUI), is developed to perform the full functionality of gene selection and classification in high dimensional datasets. The so-called HDG-select application is validated on eleven high dimensional datasets of the format CSV and GEO soft. The proposed tool uses the efficient algorithm of combined filter-GBPSO-SVM and it was made freely available to users. It was found that the proposed HDG-select outperformed other tools reported in literature and presented a competitive performance, accessibility, and functionality.
基因的选择和分类对于识别与特定疾病相关的基因至关重要。开发一个兼具统计严谨性和机器学习功能的用户友好型应用程序,以帮助生物医学研究人员和终端用户,具有重要意义。在这项工作中,开发了一种基于图形用户界面(GUI)的新型独立应用程序,以在高维数据集中执行基因选择和分类的全部功能。所谓的HDG-select应用程序在11个CSV和GEO soft格式的高维数据集上得到了验证。所提出的工具使用了组合过滤器-GBPSO-SVM的高效算法,并向用户免费提供。结果发现,所提出的HDG-select优于文献中报道的其他工具,并具有具有竞争力的性能、可访问性和功能。