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HDG-select:一种基于图形用户界面的新型应用程序,用于高维数据集中的基因选择和分类。

HDG-select: A novel GUI based application for gene selection and classification in high dimensional datasets.

作者信息

Hameed Shilan S, Hassan Rohayanti, Hassan Wan Haslina, Muhammadsharif Fahmi F, Latiff Liza Abdul

机构信息

Computer Systems and Networks (CSN), Malaysia-Japan International Institute of Technology (MJIIT), Universiti Teknologi Malaysia, Kuala Lumpur, Malaysia.

Directorate of Information Technology, Koya University, Koya, Kurdistan Region-F.R., Iraq.

出版信息

PLoS One. 2021 Jan 28;16(1):e0246039. doi: 10.1371/journal.pone.0246039. eCollection 2021.

Abstract

The selection and classification of genes is essential for the identification of related genes to a specific disease. Developing a user-friendly application with combined statistical rigor and machine learning functionality to help the biomedical researchers and end users is of great importance. In this work, a novel stand-alone application, which is based on graphical user interface (GUI), is developed to perform the full functionality of gene selection and classification in high dimensional datasets. The so-called HDG-select application is validated on eleven high dimensional datasets of the format CSV and GEO soft. The proposed tool uses the efficient algorithm of combined filter-GBPSO-SVM and it was made freely available to users. It was found that the proposed HDG-select outperformed other tools reported in literature and presented a competitive performance, accessibility, and functionality.

摘要

基因的选择和分类对于识别与特定疾病相关的基因至关重要。开发一个兼具统计严谨性和机器学习功能的用户友好型应用程序,以帮助生物医学研究人员和终端用户,具有重要意义。在这项工作中,开发了一种基于图形用户界面(GUI)的新型独立应用程序,以在高维数据集中执行基因选择和分类的全部功能。所谓的HDG-select应用程序在11个CSV和GEO soft格式的高维数据集上得到了验证。所提出的工具使用了组合过滤器-GBPSO-SVM的高效算法,并向用户免费提供。结果发现,所提出的HDG-select优于文献中报道的其他工具,并具有具有竞争力的性能、可访问性和功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88bb/7842997/9d45b911b591/pone.0246039.g001.jpg

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