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一个上皮-间充质转化相关的长非编码 RNA 标志物,用于预测肾透明细胞癌患者的总生存期和免疫微环境。

An epithelial-mesenchymal transition-related long non-coding RNA signature to predict overall survival and immune microenvironment in kidney renal clear cell carcinoma.

机构信息

Department of Urology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology , Wuhan, China.

Department of Cardiology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.

出版信息

Bioengineered. 2021 Dec;12(1):555-564. doi: 10.1080/21655979.2021.1880718.

Abstract

Kidney renal clear cell carcinoma (ccRCC) is a malignant tumor originating from renal tubular epithelium, lncRNAs can regulate the occurrence and development of EMT by targeting EMT transcription factors. We constructed a new survival signature based on EMT-related differentially expressed lncRNAs obtained from the Cancer Genome Atlas (TCGA-KIRC). We first determined 1377 EMT-related lncRNAs, lncRNA AL035661.1 with the largest correlation coefficient and the target gene was (cor = 0.843; = 1.37E-146). Meanwhile, we found an AUC of 0.758 in our signature and we predicted the AUC values of the patients' 1, 2, 3-year survival rate as 0.768, 0.749, and 0.762 in TCGA cohort, respectively. Multivariate COX analysis was performed to determine if risk score was an independent prognostic predictor of OS. The results indicated that our risk score can be an independent predictor for OS (Univariate: HR = 1.350, 95% CI = 1.276-1.428, < 0.001; Multivariate: HR = 1.295, 95% CI = 1.201-1.396, < 0.001). We identified novel EMT-related lncRNAs markers for ccRCC prognosis. The underlying mechanism between EMT-related lncRNAs in ccRCC and tumor immunity is still unclear and requires further study.

摘要

肾透明细胞癌(ccRCC)是一种起源于肾小管上皮的恶性肿瘤,lncRNAs 可以通过靶向 EMT 转录因子来调节 EMT 的发生和发展。我们基于从癌症基因组图谱(TCGA-KIRC)获得的 EMT 相关差异表达 lncRNAs 构建了一个新的生存特征。我们首先确定了 1377 个 EMT 相关 lncRNAs,lncRNA AL035661.1 与最大相关系数和靶基因具有最大相关性(cor=0.843;=1.37E-146)。同时,我们发现我们的特征的 AUC 为 0.758,我们预测 TCGA 队列中患者的 1、2、3 年生存率的 AUC 值分别为 0.768、0.749 和 0.762。进行多变量 COX 分析以确定风险评分是否是 OS 的独立预后预测因子。结果表明,我们的风险评分可以是 OS 的独立预后预测因子(单变量:HR=1.350,95%CI=1.276-1.428,<0.001;多变量:HR=1.295,95%CI=1.201-1.396,<0.001)。我们确定了用于 ccRCC 预后的新型 EMT 相关 lncRNAs 标志物。ccRCC 中 EMT 相关 lncRNAs 与肿瘤免疫之间的潜在机制尚不清楚,需要进一步研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca67/8806254/09b98a0c5566/KBIE_A_1880718_F0001_OC.jpg

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