• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

来自秘鲁亚马逊地区的产油微藻菌株UCP001的完整线粒体基因组。

The complete mitochondrial genome of the oleaginous microalgae strain UCP001 from the Peruvian Amazon.

作者信息

Cobos Marianela, Grandez Gad E, Maddox J Dylan, Castro Carlos G, Rodríguez Hicler N, Estela Segundo L, Grández Miguel A, Paredes Jae D, Tello-Espinoza Rodil, Adrianzén Pedro M, Marapara Jorge L, Castro Juan C

机构信息

Laboratorio de Biotecnología y Bioenergética (LBB), Universidad Científica del Perú (UCP), Loreto, Perú.

Unidad Especializada de Biotecnología, Centro de Investigaciones de Recursos Naturales de la Amazonía (CIRNA), Universidad Nacional de la Amazonia Peruana (UNAP), Loreto, Perú.

出版信息

Mitochondrial DNA B Resour. 2021 Jan 8;6(1):50-52. doi: 10.1080/23802359.2020.1846470.

DOI:10.1080/23802359.2020.1846470
PMID:33521263
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7808381/
Abstract

strain UCP001 is a native oleaginous microalgae isolated from the Peruvian Amazon basin. In this study we sequenced, assembled, and functionally annotated the complete mitochondrial genome of the native oleaginous microalgae strain UCP001 (Accesion number MT701044). This mitogenome is a typical circular double stranded DNA molecule of 41,048 bp in total length with G + C content of 37.4%. The mitogenome contains 49 genes, including 18 protein coding genes, 5 ribosomal (rRNA) genes and 26 transfer RNA (tRNA) genes. A phylogenetic analysis of 18 microalgae species indicated that strain UCP001 was closely related to and . The complete mitochondrial genome sequence of strain UCP001 enriches genomic resources of oleaginous native microalgae from the Peruvian Amazon for further basic and applied research.

摘要

UCP001菌株是一种从秘鲁亚马逊河流域分离出的本土产油微藻。在本研究中，我们对本土产油微藻UCP001菌株的完整线粒体基因组进行了测序、组装和功能注释（登录号MT701044）。该线粒体基因组是一个典型的环状双链DNA分子，全长41,048 bp，G + C含量为37.4%。该线粒体基因组包含49个基因，包括18个蛋白质编码基因、5个核糖体（rRNA）基因和26个转移RNA（tRNA）基因。对18种微藻物种的系统发育分析表明，UCP001菌株与[具体物种1]和[具体物种2]密切相关。UCP001菌株的完整线粒体基因组序列丰富了来自秘鲁亚马逊地区的本土产油微藻的基因组资源，可用于进一步的基础研究和应用研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e9/7808381/23ae02c9baed/TMDN_A_1846470_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e9/7808381/23ae02c9baed/TMDN_A_1846470_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e9/7808381/23ae02c9baed/TMDN_A_1846470_F0001_B.jpg

相似文献

1
The complete mitochondrial genome of the oleaginous microalgae strain UCP001 from the Peruvian Amazon.来自秘鲁亚马逊地区的产油微藻菌株UCP001的完整线粒体基因组。
Mitochondrial DNA B Resour. 2021 Jan 8;6(1):50-52. doi: 10.1080/23802359.2020.1846470.
2
Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon.来自秘鲁亚马逊地区的三种本地产油微藻转录组的从头组装和功能注释数据集。
Data Brief. 2020 Jun 21;31:105917. doi: 10.1016/j.dib.2020.105917. eCollection 2020 Aug.
3
De novo transcriptome assembly of the green alga Ankistrodesmus falcatus.绿色藻类弯角石莼的从头转录组组装。
PLoS One. 2021 May 14;16(5):e0251668. doi: 10.1371/journal.pone.0251668. eCollection 2021.
4
The complete mitochondrial genome of a microalgae strain XJCH-01 from Tarim Basin of Xinjiang, China.来自中国新疆塔里木盆地的一株微藻XJCH-01的完整线粒体基因组。
Mitochondrial DNA B Resour. 2020 Feb 28;5(2):1204-1205. doi: 10.1080/23802359.2020.1731371. eCollection 2020.
5
The complete mitochondrial genome of an oil-rich microalga TY (Chlorophyta).一种富含油脂的微藻TY（绿藻门）的完整线粒体基因组。
Mitochondrial DNA B Resour. 2021 Jul 15;6(8):2408-2409. doi: 10.1080/23802359.2021.1952118. eCollection 2021.
6
The complete mitochondrial genome of the green microalgae strain SQ.绿色微藻菌株SQ的完整线粒体基因组
Mitochondrial DNA B Resour. 2017 May 27;2(1):311-312. doi: 10.1080/23802359.2017.1331331.
7
The complete mitochondrial genome of the Caulerpa lentillifera (Ulvophyceae, Chlorophyta): Sequence, genome content, organization structure and phylogenetic consideration.叶枝藻（Ulvophyceae，Chlorophyta）的完整线粒体基因组：序列、基因组内容、组织结构和系统发育考虑。
Gene. 2018 Oct 5;673:225-238. doi: 10.1016/j.gene.2018.06.050. Epub 2018 Jun 19.
8
The complete mitochondrial genome of a transitional form in secondary endosymbiotic Cryptophyte algae strain CCMP2712.隐藻门藻类CCMP2712菌株中次生内共生过渡形态的完整线粒体基因组。
Mitochondrial DNA B Resour. 2018 Oct 26;3(2):1304-1305. doi: 10.1080/23802359.2018.1535866.
9
Effects of different media composition, light intensity and photoperiod on morphology and physiology of freshwater microalgae Ankistrodesmus falcatus--a potential strain for bio-fuel production.不同培养基组成、光照强度和光周期对淡水微藻新月藻形态和生理的影响——一种有潜力的生物燃料生产菌株。
Bioresour Technol. 2014 Nov;171:367-74. doi: 10.1016/j.biortech.2014.08.086. Epub 2014 Aug 29.
10
Complete mitochondrial genome of a hydrocarbon-producing green alga Botryococcus braunii strain Showa.产烃绿藻布朗葡萄藻昭和株的完整线粒体基因组
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Jul;27(4):2619-20. doi: 10.3109/19401736.2015.1041122. Epub 2015 Jun 29.

本文引用的文献

1
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference.RAxML-NG：用于最大似然系统发育推断的快速、可扩展和用户友好的工具。
Bioinformatics. 2019 Nov 1;35(21):4453-4455. doi: 10.1093/bioinformatics/btz305.
2
tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences.tRNAscan-SE：在基因组序列中搜索tRNA基因。
Methods Mol Biol. 2019;1962:1-14. doi: 10.1007/978-1-4939-9173-0_1.
3
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization.MAFFT 在线服务：多序列比对、交互式序列选择和可视化。
Brief Bioinform. 2019 Jul 19;20(4):1160-1166. doi: 10.1093/bib/bbx108.
4
GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
5
NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty：从头组装细胞器基因组的全基因组数据。
Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
6
PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses.PartitionFinder 2：用于选择分子和形态系统发育分析进化分区模型的新方法。
Mol Biol Evol. 2017 Mar 1;34(3):772-773. doi: 10.1093/molbev/msw260.
7
tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes.tRNAscan-SE在线工具：整合搜索与上下文以分析转运RNA基因
Nucleic Acids Res. 2016 Jul 8;44(W1):W54-7. doi: 10.1093/nar/gkw413. Epub 2016 May 12.
8
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
9
Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).从南瓜和西瓜的完整线粒体基因组序列探讨线粒体基因组大小的进化。
Mol Biol Evol. 2010 Jun;27(6):1436-48. doi: 10.1093/molbev/msq029. Epub 2010 Jan 29.
10
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.trimal：一种用于大规模系统发育分析中自动对齐修剪的工具。
Bioinformatics. 2009 Aug 1;25(15):1972-3. doi: 10.1093/bioinformatics/btp348. Epub 2009 Jun 8.