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人心果野生种(Ruiz & Pavon.)Radlk. 的叶绿体全基因组序列及系统发育分析

Complete chloroplast genome sequence and phylogenetic analysis of a wild species of abiu fruit, (Ruiz & Pavon.) Radlk.

作者信息

Tao Liang, Shi Zhuo-Gong, Long Qing-Yi

机构信息

Key Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, Southwest Forestry University, Kunming, China.

Yunnan Institute of Tropical Crops, Xishuangbanna, China.

出版信息

Mitochondrial DNA B Resour. 2021 Jan 12;6(1):138-139. doi: 10.1080/23802359.2020.1852897.

Abstract

Abiu fruit ( [Ruiz & Pavon.] Radlk.) is endemic to the Amazonian region of South America, the fruit is also called yellow star apple, blueberry pie fruit and cauje. In this study, the chloroplast genome sequence of was assembled and characterized using Illumina sequencing. The whole chloroplast genome of the wild species of abiu fruit is 158,916 bp, composed of four regions: a large single-copy region (88,096 bp) and a small single copy (18,620 bp) region, separated by two inverted repeat regions (26,100 bp), and the GC content is 36.83%. A total of 133 genes were annotated, including 88 that encoded proteins, eight that encoded rRNA genes and 37 that encoded tRNA genes. A maximum likelihood tree was constructed based on the sequences of chloroplast genome, the results showed that the wild species of is the most closely related to . This study provided abundant genomics data for the research and development of .

摘要

人心果([鲁伊斯和帕冯。]拉德克。)原产于南美洲的亚马逊地区,这种水果也被称为黄星苹果、蓝莓派果和考耶。在本研究中,利用Illumina测序技术对人心果的叶绿体基因组序列进行了组装和特征分析。人心果野生种的完整叶绿体基因组为158,916 bp,由四个区域组成:一个大单拷贝区域(88,096 bp)和一个小单拷贝区域(18,620 bp),由两个反向重复区域(26,100 bp)隔开,GC含量为36.83%。共注释了133个基因,其中包括88个编码蛋白质的基因、8个编码rRNA基因的基因和37个编码tRNA基因的基因。基于叶绿体基因组序列构建了最大似然树,结果表明人心果野生种与[此处原文缺失相关物种名称]关系最为密切。本研究为人心果的研发提供了丰富的基因组学数据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad13/7819124/315250b889a4/TMDN_A_1852897_F0001_B.jpg

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