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DNA 通过超薄纳米缝的迁移。

Translocation of DNA through Ultrathin Nanoslits.

机构信息

Kavli Institute of Nanoscience Delft, Delft University of Technology, Delft, 2629 HZ, The Netherlands.

Department of Physics & Astronomy, School of Natural Sciences, University of Manchester, Oxford Road, Manchester, M13 9PL, UK.

出版信息

Adv Mater. 2021 Mar;33(11):e2007682. doi: 10.1002/adma.202007682. Epub 2021 Feb 1.


DOI:10.1002/adma.202007682
PMID:33522015
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8011289/
Abstract

2D nanoslit devices, where two crystals with atomically flat surfaces are separated by only a few nanometers, have attracted considerable attention because their tunable control over the confinement allows for the discovery of unusual transport behavior of gas, water, and ions. Here, the passage of double-stranded DNA molecules is studied through nanoslits fabricated from exfoliated 2D materials, such as graphene or hexagonal boron nitride, and the DNA polymer behavior is examined in this tight confinement. Two types of events are observed in the ionic current: long current blockades that signal DNA translocation and short spikes where DNA enters the slits but withdraws. DNA translocation events exhibit three distinct phases in their current-blockade traces-loading, translation, and exit. Coarse-grained molecular dynamics simulation allows the different polymer configurations of these phases to be identified. DNA molecules, including folds and knots in their polymer structure, are observed to slide through the slits with near-uniform velocity without noticeable frictional interactions of DNA with the confining graphene surfaces. It is anticipated that this new class of 2D-nanoslit devices will provide unique ways to study polymer physics and enable lab-on-a-chip biotechnology.

摘要

2D 纳米狭缝器件,其中两个具有原子级平整表面的晶体仅相隔几个纳米,引起了相当大的关注,因为它们对限制的可调控制允许发现气体、水和离子的异常输运行为。在这里,通过从剥离的二维材料(如石墨烯或六方氮化硼)制造的纳米狭缝研究了双链 DNA 分子的通过,并且在这种紧密限制下检查了 DNA 聚合物的行为。在离子电流中观察到两种类型的事件:长电流阻断,表明 DNA 易位,以及短尖峰,其中 DNA 进入狭缝但退出。DNA 易位事件在其电流阻断迹线中表现出三个不同的阶段 - 加载、翻译和退出。粗粒度分子动力学模拟允许识别这些阶段的不同聚合物构型。观察到包括聚合物结构中的折叠和结在内的 DNA 分子以近乎均匀的速度通过狭缝滑动,而没有 DNA 与限制的石墨烯表面之间的明显摩擦相互作用。预计这种新型 2D 纳米狭缝器件将提供独特的方法来研究聚合物物理,并实现芯片上实验室生物技术。

相似文献

[1]
Translocation of DNA through Ultrathin Nanoslits.

Adv Mater. 2021-3

[2]
Spontaneous ssDNA stretching on graphene and hexagonal boron nitride in plane heterostructures.

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[3]
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[4]
Epitaxial growth of single-domain graphene on hexagonal boron nitride.

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[5]
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[6]
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[7]
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J Phys Condens Matter. 2013-12-18

[8]
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[9]
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[10]
DNA Translocation through Vertically Stacked 2D Layers of Graphene and Hexagonal Boron Nitride Heterostructure Nanopore.

ACS Appl Bio Mater. 2021-1-18

引用本文的文献

[1]
Diffusion of DNA on Atomically Flat 2D Material Surfaces.

ACS Nano. 2025-6-17

[2]
The Emergence of Nanofluidics for Single-Biomolecule Manipulation and Sensing.

Anal Chem. 2025-4-29

[3]
Electric Field Mediated Unclogging of Angstrom-Scale Channels.

Small Methods. 2025-3

[4]
Nanopore Translocation Reveals Electrophoretic Force on Noncanonical RNA:DNA Double Helix.

ACS Nano. 2024-6-11

[5]
DNA Carrier-Assisted Molecular Ping-Pong in an Asymmetric Nanopore.

Nano Lett. 2023-12-13

[6]
Next-Generation Nanopore Sensors Based on Conductive Pulse Sensing for Enhanced Detection of Nanoparticles.

Small. 2024-1

[7]
Discrimination of RNA fiber structures using solid-state nanopores.

Nanoscale. 2022-5-16

[8]
Ionic current magnetic fields in 3D finite-length nanopores and nanoslits.

Eur Phys J Plus. 2022

[9]
Multi-resolution simulation of DNA transport through large synthetic nanostructures.

Phys Chem Chem Phys. 2022-2-2

[10]
Protein Transport through Nanopores Illuminated by Long-Time-Scale Simulations.

ACS Nano. 2021-6-22

本文引用的文献

[1]
MrDNA: a multi-resolution model for predicting the structure and dynamics of DNA systems.

Nucleic Acids Res. 2020-5-21

[2]
Nanofluidics coming of age.

Nat Mater. 2020-3

[3]
Complex DNA knots detected with a nanopore sensor.

Nat Commun. 2019-10-2

[4]
Step-defect guided delivery of DNA to a graphene nanopore.

Nat Nanotechnol. 2019-8-5

[5]
Molecular streaming and its voltage control in ångström-scale channels.

Nature. 2019-3

[6]
Rapid and Accurate Determination of Nanopore Ionic Current Using a Steric Exclusion Model.

ACS Sens. 2019-3-13

[7]
Ballistic molecular transport through two-dimensional channels.

Nature. 2018-6-20

[8]
Size effect in ion transport through angstrom-scale slits.

Science. 2017-10-27

[9]
Nanopores and Nanochannels: From Gene Sequencing to Genome Mapping.

ACS Nano. 2016-11-10

[10]
Molecular transport through capillaries made with atomic-scale precision.

Nature. 2016-9-7

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