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自噬相关长非编码 RNA 标志物预测子宫内膜癌的价值。

Prognostic value of an autophagy-related long-noncoding-RNA signature for endometrial cancer.

机构信息

Department of Obstetrics and Gynecology, The First Affiliated Hospital of Jinan University, Guangzhou 510632, China.

Department of Obstetrics and Gynecology, Foshan Women and Children Hospital, Foshan 528000, China.

出版信息

Aging (Albany NY). 2021 Feb 1;13(4):5104-5119. doi: 10.18632/aging.202431.

Abstract

This study retrieved the transcriptome profiling data of 552 endometrial cancer (EC) patients from the TCGA (The Cancer Genome Atlas) database, and identified 1297 lncRNAs (long noncoding RNAs) related to autophagy genes using Pearson correlation analysis. Univariate Cox regression analysis of the training data set revealed that 14 autophagy-related lncRNAs had significantly prognostic value for endometrial cancer ( < 0.01). Multivariate Cox regression analysis of these autophagy-related lncRNAs established the following autophagy-related lncRNA prognosis signature for endometrial cancer: PI = (0.255 × AC005229.4 expression) + (0.405 × BX322234.1 expression) + (0.169 × FIRRE expression value) + (-0.122 × RAB11B-AS1 expression) + (-0.338 × AC003102.1 expression). This signature was validated in both the testing data set and the entire data set. The areas under the receiver operating characteristics curves for the 1-, 3-, and 5-year overall survival rates in the entire data set were 0.772, 0.733, and 0.714, respectively. In addition, a gene set enrichment analysis confirmed that cancer-related and autophagy-related pathways were significantly up-regulated in the high-risk group. In summary, this study has demonstrated that a signature comprising five autophagy-related lncRNAs has potential as an independent prognostic indicator of endometrial cancer, and also that these lncRNAs may play a key role in the development of endometrial cancer.

摘要

本研究从 TCGA(癌症基因组图谱)数据库中检索了 552 例子宫内膜癌(EC)患者的转录组谱数据,并通过 Pearson 相关分析鉴定了 1297 个与自噬基因相关的 lncRNAs。训练数据集的单变量 Cox 回归分析显示,14 个自噬相关 lncRNA 对子宫内膜癌具有显著的预后价值(<0.01)。对这些自噬相关 lncRNA 的多变量 Cox 回归分析建立了子宫内膜癌的以下自噬相关 lncRNA 预后特征:PI=(0.255×AC005229.4 表达)+(0.405×BX322234.1 表达)+(0.169×FIRRE 表达值)+(-0.122×RAB11B-AS1 表达)+(-0.338×AC003102.1 表达)。该特征在测试数据集和整个数据集均得到验证。整个数据集的 1、3 和 5 年总生存率的受试者工作特征曲线下面积分别为 0.772、0.733 和 0.714。此外,基因集富集分析证实,高风险组中癌症相关和自噬相关途径显著上调。综上所述,本研究表明,由五个自噬相关 lncRNA 组成的特征具有作为子宫内膜癌独立预后指标的潜力,并且这些 lncRNA 可能在子宫内膜癌的发展中发挥关键作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98c1/7950257/0480d25fe3db/aging-13-202431-g001.jpg

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