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×V.的完整叶绿体基因组序列

The complete chloroplast genome sequence of × V.

作者信息

Zhang Lipeng, Guo Dinghan, Liu Miaomiao, Dou Feifei, Ren Yi, Li Dongmei, Wang Shiping, Wang Lei, Ma Chao, Zha Qian, Su Ling, Gong Lei, Liu Huaifeng

机构信息

Department of Horticulture, College of Agriculture, Shihezi University, Shihezi, Xinjiang, China.

Xinjiang Production and Construction Corps Key Laboratory of Special Fruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization, Shihezi, Xinjiang, China.

出版信息

Mitochondrial DNA B Resour. 2021 Jan 16;6(1):166-167. doi: 10.1080/23802359.2020.1855605.

DOI:10.1080/23802359.2020.1855605
PMID:33537430
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7832510/
Abstract

× is a tetraploid grape, a Franco-american species. This study first published the complete chloroplast genome of × was assembled. The chloroplast genome is 160928 bp in length, including a large single copy region (89,148 bp), a small single-copy region (19,072 bp) and a pair of inverted repeats of 26,354 bp. The chloroplast genome encodes 133 genes, comprising 88 CDSs, 37 tRNA genes and 8 rRNA genes. The phylogenetic tree demonstrated that × is different from the other 16 varieties.

摘要

×是一种四倍体葡萄,属于欧美杂交种。本研究首次公布了组装得到的×的完整叶绿体基因组。叶绿体基因组长度为160928 bp,包括一个大单拷贝区域(89,148 bp)、一个小单拷贝区域(19,072 bp)和一对26,354 bp的反向重复序列。叶绿体基因组编码133个基因,包括88个编码序列、37个tRNA基因和8个rRNA基因。系统发育树表明×与其他16个品种不同。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08e3/7832510/634c57187de6/TMDN_A_1855605_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08e3/7832510/634c57187de6/TMDN_A_1855605_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08e3/7832510/634c57187de6/TMDN_A_1855605_F0001_B.jpg

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本文引用的文献

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MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.MEGA7:适用于更大数据集的分子进化遗传学分析版本7.0
Mol Biol Evol. 2016 Jul;33(7):1870-4. doi: 10.1093/molbev/msw054. Epub 2016 Mar 22.
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A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.A5-miseq:一种用于从Illumina MiSeq数据组装微生物基因组的更新流程。
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Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids.基于完整叶绿体基因组序列的葡萄属(葡萄科)系统发育分析:分类群抽样和系统发育方法对解决蔷薇类植物间关系的影响
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