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林奈的完整叶绿体基因组及十字花科系统发育分析

The complete chloroplast genome of linnaeus and phylogenetic analysis of brassicaceae.

作者信息

Shang Shuai, Zhao Liping, Xu Tao, Li Caiyun, Shen Ruiting

机构信息

College of Biological and Environmental Engineering, Binzhou University, Binzhou, China.

Shandong Fisheries Technology Extension Center, Jinan, China.

出版信息

Mitochondrial DNA B Resour. 2021 Jan 16;6(1):178-179. doi: 10.1080/23802359.2020.1860699.

DOI:10.1080/23802359.2020.1860699
PMID:33537434
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7832579/
Abstract

The complete chloroplast genome sequence of Linnaeus was assembled and characterized in the present study. The plastome is 153,989 bp in length, which is comprised of a large single-copy (LSC) region of 83,565 bp, a small single-copy (SSC) region of 17,526 bp, and two inverted repeat (IR) regions of 26,449 bp. The overall GC content of the plastome was 36.5%. The new sequence comprised 125 genes, including 84 protein-coding genes, 8 ribosomal RNA genes, and 33 tRNA genes. Phylogenetic analysis showed that L. was close to and .

摘要

在本研究中,对林奈的完整叶绿体基因组序列进行了组装和特征分析。该质体基因组长度为153,989 bp,由一个83,565 bp的大单拷贝(LSC)区域、一个17,526 bp的小单拷贝(SSC)区域和两个26,449 bp的反向重复(IR)区域组成。质体基因组的总体GC含量为36.5%。新序列包含125个基因,包括84个蛋白质编码基因、8个核糖体RNA基因和33个tRNA基因。系统发育分析表明,L.与 和 接近。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bc6b/7832579/5b75e614624b/TMDN_A_1860699_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bc6b/7832579/5b75e614624b/TMDN_A_1860699_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bc6b/7832579/5b75e614624b/TMDN_A_1860699_F0001_B.jpg

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本文引用的文献

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Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
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Plastome phylogeny and early diversification of Brassicaceae.十字花科的质体基因组系统发育与早期多样化
BMC Genomics. 2017 Feb 16;18(1):176. doi: 10.1186/s12864-017-3555-3.
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