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多目标方法在子痫前期药物再利用中的应用。

A Multi-Objective Approach for Drug Repurposing in Preeclampsia.

机构信息

Grupo de Bio-Quimioinformática, Universidad de Las Américas, Quito 170513, Ecuador.

Facultad de Ingeniería y Ciencias Aplicadas, Universidad de Las Américas, Quito 170513, Ecuador.

出版信息

Molecules. 2021 Feb 3;26(4):777. doi: 10.3390/molecules26040777.

Abstract

Preeclampsia is a hypertensive disorder that occurs during pregnancy. It is a complex disease with unknown pathogenesis and the leading cause of fetal and maternal mortality during pregnancy. Using all drugs currently under clinical trial for preeclampsia, we extracted all their possible targets from the DrugBank and ChEMBL databases and labeled them as "targets". The proteins labeled as "off-targets" were extracted in the same way but while taking all antihypertensive drugs which are inhibitors of ACE and/or angiotensin receptor antagonist as query molecules. Classification models were obtained for each of the 55 total proteins (45 targets and 10 off-targets) using the TPOT pipeline optimization tool. The average accuracy of the models in predicting the external dataset for targets and off-targets was 0.830 and 0.850, respectively. The combinations of models maximizing their virtual screening performance were explored by combining the desirability function and genetic algorithms. The virtual screening performance metrics for the best model were: the Boltzmann-Enhanced Discrimination of ROC (BEDROC) = 0.258, the Enrichment Factor (EF) = 31.55 and the Area Under the Accumulation Curve (AUAC) = 0.831. The most relevant targets for preeclampsia were: AR, VDR, SLC6A2, NOS3 and CHRM4, while ABCG2, ERBB2, CES1 and REN led to the most relevant off-targets. A virtual screening of the DrugBank database identified estradiol, estriol, vitamins E and D, lynestrenol, mifrepristone, simvastatin, ambroxol, and some antibiotics and antiparasitics as drugs with potential application in the treatment of preeclampsia.

摘要

子痫前期是一种妊娠期间发生的高血压疾病。它是一种发病机制不明的复杂疾病,是妊娠期间胎儿和产妇死亡的主要原因。使用目前所有处于临床试验阶段的子痫前期治疗药物,我们从 DrugBank 和 ChEMBL 数据库中提取了所有可能的靶点,并将其标记为“靶点”。以所有的血管紧张素转换酶抑制剂和/或血管紧张素受体拮抗剂类降压药作为查询分子,以同样的方式提取被标记为“非靶点”的蛋白质。使用 TPOT 管道优化工具为 55 种总蛋白(45 个靶点和 10 个非靶点)中的每一种获得分类模型。目标和非靶点的模型在预测外部数据集时的平均准确率分别为 0.830 和 0.850。通过组合理想函数和遗传算法,探索了最大化模型虚拟筛选性能的组合方式。最佳模型的虚拟筛选性能指标为:Boltzmann-Enhanced Discrimination of ROC(BEDROC)= 0.258、富集因子(EF)= 31.55 和累积曲线下面积(AUAC)= 0.831。与子痫前期最相关的靶点为:AR、VDR、SLC6A2、NOS3 和 CHRM4,而 ABCG2、ERBB2、CES1 和 REN 则导致了最相关的非靶点。对 DrugBank 数据库的虚拟筛选发现,雌二醇、雌三醇、维生素 E 和 D、lynestrenol、米非司酮、辛伐他汀、氨溴索以及一些抗生素和抗寄生虫药可能具有治疗子痫前期的应用潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d909/7913128/cbbf6f00c466/molecules-26-00777-g001.jpg

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