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小麦抗白粉病相关基因家族的全基因组鉴定、进化及表达分析

Genome-wide identification, evolution, and expression of the gene family in wheat resistance to powdery mildew.

作者信息

Wang Guanghao, Long Deyu, Yu Fagang, Zhang Hong, Chen Chunhuan, Wang Yajuan, Ji Wanquan

机构信息

Shaanxi Research Station of Crop Gene Resources and Germplasm Enhancement, Ministry of Agriculture, Yangling, Shaanxi, China.

College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China.

出版信息

PeerJ. 2021 Jan 22;9:e10788. doi: 10.7717/peerj.10788. eCollection 2021.

Abstract

SNARE proteins mediate eukaryotic cell membrane/transport vesicle fusion and act in plant resistance to fungi. Herein, 173 SNARE proteins were identified in wheat and divided into 5 subfamilies and 21 classes. The number of the class type was largest in . Phylogenetic tree analysis revealed that most of the SNAREs were distributed in 21 classes. Analysis of the genetic structure revealed large differences among the 21 classes, and the structures in the same group were similar, except across individual genes. Excluding the first homoeologous group, the number in the other homoeologous groups was similar. The 2,000 bp promoter region of the genes were analyzed, and many W-box, MYB and disease-related cis-acting elements were identified. The qRT-PCR-based analysis of the genes revealed similar expression patterns of the same subfamily in one wheat variety. The expression patterns of the same gene in resistant/sensitive varieties largely differed at 6 h after infection, suggesting that SNARE proteins play an important role in early pathogen infection. Here, the identification and expression analysis of SNARE proteins provide a theoretical basis for studies of SNARE protein function and wheat resistance to powdery mildew.

摘要

SNARE蛋白介导真核细胞膜/运输小泡融合,并在植物对真菌的抗性中发挥作用。在此,从小麦中鉴定出173个SNARE蛋白,分为5个亚家族和21个类别。 类类型的数量在 中最多。系统发育树分析表明,大多数SNARE蛋白分布在21个类别中。遗传结构分析显示,这21个类别之间存在很大差异,同一组中的结构相似,但个别基因除外。除了第一个同源组外,其他同源组中的数量相似。对 基因的2000 bp启动子区域进行了分析,鉴定出许多W-box、MYB和与疾病相关的顺式作用元件。基于qRT-PCR对 基因的分析表明,同一亚家族在一个小麦品种中的表达模式相似。同一基因在抗性/敏感品种中的表达模式在感染后6小时有很大差异,这表明SNARE蛋白在病原体早期感染中起重要作用。在此,SNARE蛋白的鉴定和表达分析为研究SNARE蛋白功能和小麦对白粉病的抗性提供了理论基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf3e/7831368/05cc31ec19ea/peerj-09-10788-g001.jpg

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