Niu Ying-Feng, Li Guo-Hua, Zheng Cheng, Liu Zi-Yan, Liu Jin
Yunnan Institute of Tropical Crops, Xishuangbanna, 666100 China.
3 Biotech. 2022 Oct;12(10):274. doi: 10.1007/s13205-022-03328-7. Epub 2022 Sep 12.
The superoxide dismutase (SOD) protein significantly influences the development and growth of plants and their reaction to abiotic stresses. However, little is known about the characteristics of rubber tree genes and their expression changes under abiotic stresses. The present study recognized 11 genes in the rubber tree genome, including 7 Cu/ZnSODs, 2 MnSODs, and 2 FeSODs. Except for , s were scattered on five chromosomes. The phylogenetic analysis of SOD proteins in rubber trees and a few other plants demonstrated that the SOD proteins contained three major subgroups. Moreover, the genes belonging to the same clade contained similar gene structures, which confirmed their classification further. The extension of the gene family in the rubber tree was mainly induced by the segmental duplication events. The -acting components analysis showed that s were utilized in many biological procedures. The transcriptomics data indicated that the phosphorylation of the C-terminal domain of RNA polymerase II might control the cold response genes through the CBF pathway and activate the SOD system to respond to cold stress. The qRT-PCR results showed that the expression of was significantly downregulated under drought and salt stresses, which might dominate the adaption capability to different stresses. Additionally, salt promoted the expression levels of and 2, exhibiting their indispensable role in the salinity reaction. The study results will provide a theoretical basis for deep research on s in rubber trees.
The online version contains supplementary material available at 10.1007/s13205-022-03328-7.
超氧化物歧化酶(SOD)蛋白对植物的发育和生长以及它们对非生物胁迫的反应有显著影响。然而,关于橡胶树基因的特征及其在非生物胁迫下的表达变化知之甚少。本研究在橡胶树基因组中识别出11个基因,包括7个铜/锌超氧化物歧化酶、2个锰超氧化物歧化酶和2个铁超氧化物歧化酶。除了 ,其他基因分散在五条染色体上。橡胶树和其他一些植物中SOD蛋白的系统发育分析表明,SOD蛋白包含三个主要亚组。此外,属于同一进化枝的基因具有相似的基因结构,这进一步证实了它们的分类。橡胶树中 基因家族的扩展主要是由片段重复事件引起的。顺式作用元件分析表明, 基因在许多生物学过程中发挥作用。转录组学数据表明,RNA聚合酶II C末端结构域的磷酸化可能通过CBF途径控制冷响应基因,并激活SOD系统以应对冷胁迫。qRT-PCR结果表明, 在干旱和盐胁迫下表达显著下调,这可能主导了对不同胁迫的适应能力。此外,盐促进了 和 的表达水平,表明它们在盐度反应中不可或缺。研究结果将为深入研究橡胶树中的 基因提供理论依据。
在线版本包含可在10.1007/s13205-022-03328-7获取的补充材料。