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基于 CRISPRi 的 NIMPLY 逻辑门,用于精细调整全细胞传感以实现简单的尿液葡萄糖检测。

CRISPRi-Mediated NIMPLY Logic Gate for Fine-Tuning the Whole-Cell Sensing toward Simple Urine Glucose Detection.

机构信息

Department of Chemical Engineering, National Cheng Kung University, Tainan 701, Taiwan.

出版信息

ACS Synth Biol. 2021 Feb 19;10(2):412-421. doi: 10.1021/acssynbio.1c00014. Epub 2021 Feb 9.

DOI:10.1021/acssynbio.1c00014
PMID:33560108
Abstract

Whole-cell biosensors have been regarded as a prominent alternative to chemical and physical biosensors due to their renewability, environmental friendliness, and biocompatibility. However, there is still a lack of noninvasive measurements of urine glucose, which plays a vital role in monitoring the risk of diabetes in the healthcare system, whole-cell biosensors. In this study, we characterized a glucose-inducible promoter and further enhanced the sensing performance using three genetic effectors, which encompassed ribozyme regulator (RiboJ), clustered regularly interspaced short palindromic repeat interference (CRISPRi), and plasmid-based T7RNA polymerase (PDT7), to develop the noninvasive glucose biosensor by fluorescent signal. As a result, RiboJ increased dynamic range to 2989 au, but declined signal-to-noise (S/N) to 1.59, while CRISPRi-mediated NIMPLY gate intensified both dynamic range to 5720 au and S/N to 4.58. The use of single PDT7 orthogonal with T7 promoter in cells (, P strain) achieved a 44 180 au of dynamic range with S/N at 3.08. By coupling the PDT7 and NIMPLY-mediated CRISPRi, we constructed an optimum PIGAS strain with the highest S/N value of 4.95. Finally, we adopted the synthetic bacteria into a microdevice to afford an integrative and portable system for daily urine glucose inspection, which would be an alternative approach for medical diagnosis in the future.

摘要

全细胞生物传感器由于其可再生性、环境友好性和生物相容性,已被视为化学和物理生物传感器的一种重要替代品。然而,目前仍然缺乏对尿液葡萄糖的非侵入性测量,而尿液葡萄糖在医疗保健系统中监测糖尿病风险方面起着至关重要的作用。在本研究中,我们对葡萄糖诱导型启动子进行了表征,并使用三种遗传效应物(核酶调节剂(RiboJ)、成簇规律间隔短回文重复干扰(CRISPRi)和基于质粒的 T7RNA 聚合酶(PDT7))进一步增强了传感性能,从而通过荧光信号开发了非侵入性葡萄糖生物传感器。结果表明,RiboJ 将动态范围提高到 2989 au,但信号噪声比(S/N)降至 1.59;而 CRISPRi 介导的 NIMPLY 门则将动态范围增强到 5720 au,并将 S/N 提高到 4.58。在细胞中使用单一 PDT7 与 T7 启动子(,P 株)正交,实现了 44180 au 的动态范围,S/N 为 3.08。通过将 PDT7 和 NIMPLY 介导的 CRISPRi 相结合,我们构建了一个最优的 PIGAS 菌株,具有最高的 S/N 值 4.95。最后,我们将合成细菌引入微器件中,为日常尿液葡萄糖检测提供了一个集成式、便携式系统,这将是未来医学诊断的一种替代方法。

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