Chen Lijun, Wu Fan, Zhang Jiyu
State Key Laboratory of Grassland Agro-Ecosystems, Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture and Rural Affairs, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China.
Plants (Basel). 2021 Feb 5;10(2):303. doi: 10.3390/plants10020303.
is an annual or biennial legume species that adapts to extreme environments via its high stress tolerance. NAC and MYB transcription factors (TFs) are involved in the regulation of lignin biosynthesis, which has not been studied in . A total of 101 and 299 members were identified based on genome. Chromosome distribution and synteny analysis indicated that some genes underwent tandem duplication. Ka/Ks analysis suggested that s and s underwent strong purifying selection. Stress-, hormone- and development-related cis-elements and MYB-binding sites were identified in the promoter regions of and . Five s, two s and ten lignin biosynthesis genes were identified as presenting coexpression relationships according to weighted gene coexpression network analysis (WGCNA). Eleven and thirteen candidate and genes related to lignin biosynthesis were identified, respectively, and a network comprising these genes was constructed which further confirmed the and relationship. These candidate genes had conserved gene structures and motifs and were highly expressed in the stems and roots, and qRT-PCR further verified the expression patterns. Overall, our results provide a reference for determining the precise role of and genes in and may facilitate efforts to breed low-lignin-content forage cultivars in the future.
是一种一年生或二年生豆科植物物种,通过其高胁迫耐受性适应极端环境。NAC和MYB转录因子(TFs)参与木质素生物合成的调控,而在该植物中尚未对此进行研究。基于该植物基因组共鉴定出101个NAC成员和299个MYB成员。染色体分布和共线性分析表明一些基因经历了串联重复。Ka/Ks分析表明NAC和MYB经历了强烈的纯化选择。在NAC和MYB的启动子区域鉴定出与胁迫、激素和发育相关的顺式元件以及MYB结合位点。根据加权基因共表达网络分析(WGCNA),鉴定出5个NAC、2个MYB和10个木质素生物合成基因呈现共表达关系。分别鉴定出11个和13个与木质素生物合成相关的候选NAC和MYB基因,并构建了包含这些基因的网络,进一步证实了NAC和MYB的关系。这些候选基因具有保守的基因结构和基序,在茎和根中高表达,qRT-PCR进一步验证了表达模式。总体而言,我们的结果为确定NAC和MYB基因在该植物中的精确作用提供了参考,并可能有助于未来培育低木质素含量饲料品种的努力。