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通过对四种拓扑结构不同的脂质相的化学模拟确定曲率能量。

Curvature Energetics Determined by Alchemical Simulation on Four Topologically Distinct Lipid Phases.

机构信息

Unit on Membrane Chemical Physics, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892, United States.

Postdoctoral Research Associate Program, National Institute of General Medical Sciences, National Institutes of Health, Bethesda, Maryland 20892, United States.

出版信息

J Phys Chem B. 2021 Feb 25;125(7):1815-1824. doi: 10.1021/acs.jpcb.0c09458. Epub 2021 Feb 11.

Abstract

The relative curvature energetics of two lipids are tested using thermodynamic integration (TI) on four topologically distinct lipid phases. Simulations use TI to switch between choline headgroup lipids (POPC; that prefers to be flat) and ethanolamine headgroup lipids (POPE; that prefer, for example, the inner monolayer of vesicles). The thermodynamical moving of the lipids between planar, inverse hexagonal (H), cubic (Q; Pn3m space group), and vesicle topologies reveals differences in material parameters that were previously challenging to access. The methodology allows for predictions of two important lipid material properties: the difference in POPC/POPE monolayer intrinsic curvature (Δ) and the difference in POPC/POPE monolayer Gaussian curvature modulus (Δκ̅), both of which are connected to the energetics of topological variation. Analysis of the TI data indicates that, consistent with previous experiment and simulation, the of POPE is more negative than POPC (Δ = -0.018 ± 0.001 Å). The theoretical framework extracts significant differences in κ̅ of which POPE is less negative than POPC by 2.0 to 4.0 kcal/mol. The range of these values is determined by considering subsets of the simulations, and disagreement between these subsets suggests separate mechanical parameters at very high curvature. Finally, the fit of the TI data to the model indicates that the position of the pivotal plane of curvature is not constant across topologies at high curvature. Overall, the results offer insights into lipid material properties, the limits of a single HC model, and how to test them using simulation.

摘要

使用热力学积分(TI)在四种拓扑上不同的脂质相中测试两种脂质的相对曲率能。模拟使用 TI 在胆碱头部基团脂质(POPC;喜欢变平)和乙醇胺头部基团脂质(POPE;例如,更喜欢囊泡的内层)之间切换。脂质在平面、反六方(H)、立方(Q;Pn3m 空间群)和囊泡拓扑之间的热力学移动揭示了以前难以获得的材料参数差异。该方法允许预测两种重要的脂质材料特性:POPC/POPE 单层固有曲率(Δ)和 POPC/POPE 单层高斯曲率模量(Δκ̅)的差异,这两者都与拓扑变化的能量有关。对 TI 数据的分析表明,与之前的实验和模拟一致,POPE 的 比 POPC 更负(Δ=-0.018±0.001Å)。理论框架提取了 κ̅ 的显著差异,其中 POPE 的比 POPC 更负 2.0 到 4.0 kcal/mol。这些值的范围通过考虑模拟的子集来确定,这些子集之间的分歧表明在非常高的曲率下存在单独的机械参数。最后,TI 数据对模型的拟合表明,在高曲率时,曲率枢轴平面的位置在不同拓扑结构中不是恒定的。总的来说,这些结果提供了对脂质材料特性、单个 HC 模型的限制以及如何使用模拟来测试它们的深入了解。

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