Baranowski Maciej, Pérez Javier
Synchrotron SOLEIL, Gif sur Yvette Cedex, France.
Methods Mol Biol. 2020;2168:177-197. doi: 10.1007/978-1-0716-0724-4_8.
While X-ray crystallography remains the most popular and productive technique for protein structure determination, it very often produces incomplete models, either due to truncations introduced by the scientists or locally weak experimental data. This problem is even more common for transmembrane proteins, owing to the difficulties inherent in their crystallization. By the virtue of operating in solution, SAXS bypasses the problems with crystallization and allows for easier work with full-length constructs and, thus, can potentially be used to fill the missing (and often crucial) details. Here, we describe a complete procedure to build a complete model of a transmembrane protein based on a truncated crystallographic model and experimental SEC-SAXS data using refractometry and UV absorption for internal validation of the measurements.
虽然X射线晶体学仍然是确定蛋白质结构最常用且最有效的技术,但由于科学家引入的截断或局部实验数据较弱,它常常会产生不完整的模型。对于跨膜蛋白来说,这个问题更为常见,因为其结晶存在固有困难。由于SAXS在溶液中进行操作,它绕过了结晶问题,使得处理全长构建体更加容易,因此有可能用于填补缺失(且通常至关重要)的细节。在此,我们描述了一个完整的程序,该程序基于截断的晶体学模型和实验性SEC-SAXS数据,利用折射测量法和紫外吸收对测量进行内部验证,从而构建跨膜蛋白的完整模型。