Laboratory of Evolutionary Genetics and Genomics, The Rockefeller University, New York, NY, USA.
Department of Integrative Biology and Museum of Vertebrate Zoology, University of California, Berkeley, Berkeley, CA, USA.
Mol Biol Evol. 2021 May 19;38(6):2532-2546. doi: 10.1093/molbev/msab048.
Studying how novel phenotypes originate and evolve is fundamental to the field of evolutionary biology as it allows us to understand how organismal diversity is generated and maintained. However, determining the basis of novel phenotypes is challenging as it involves orchestrated changes at multiple biological levels. Here, we aim to overcome this challenge by using a comparative species framework combining behavioral, gene expression, and genomic analyses to understand the evolutionary novel egg-laying substrate-choice behavior of the invasive pest species Drosophila suzukii. First, we used egg-laying behavioral assays to understand the evolution of ripe fruit oviposition preference in D. suzukii compared with closely related species D. subpulchrella and D. biarmipes as well as D. melanogaster. We show that D. subpulchrella and D. biarmipes lay eggs on both ripe and rotten fruits, suggesting that the transition to ripe fruit preference was gradual. Second, using two-choice oviposition assays, we studied how D. suzukii, D. subpulchrella, D. biarmipes, and D. melanogaster differentially process key sensory cues distinguishing ripe from rotten fruit during egg-laying. We found that D. suzukii's preference for ripe fruit is in part mediated through a species-specific preference for stiff substrates. Last, we sequenced and annotated a high-quality genome for D. subpulchrella. Using comparative genomic approaches, we identified candidate genes involved in D. suzukii's ability to seek out and target ripe fruits. Our results provide detail to the stepwise evolution of pest activity in D. suzukii, indicating important cues used by this species when finding a host, and the molecular mechanisms potentially underlying their adaptation to a new ecological niche.
研究新表型的起源和进化是进化生物学领域的基础,因为它使我们能够了解生物多样性是如何产生和维持的。然而,确定新表型的基础具有挑战性,因为它涉及到多个生物学层次的协调变化。在这里,我们旨在通过使用比较物种框架,结合行为、基因表达和基因组分析,来理解入侵害虫物种黑腹果蝇的产卵新底物选择行为的进化。首先,我们使用产卵行为测定来了解黑腹果蝇与近缘物种 D. subpulchrella 和 D. biarmipes 以及 D. melanogaster 相比,其成熟果实产卵偏好的进化。我们发现 D. subpulchrella 和 D. biarmipes 既在成熟果实上产卵,也在腐烂果实上产卵,这表明对成熟果实偏好的转变是渐进的。其次,通过二选一产卵测定,我们研究了黑腹果蝇、D. subpulchrella、D. biarmipes 和 D. melanogaster 在产卵过程中是如何区分成熟果实和腐烂果实的关键感官线索。我们发现,黑腹果蝇对成熟果实的偏好部分是通过对硬底物的特异性偏好来介导的。最后,我们对 D. subpulchrella 进行了高质量基因组测序和注释。通过比较基因组学方法,我们鉴定了与黑腹果蝇寻找和靶向成熟果实能力相关的候选基因。我们的研究结果为黑腹果蝇的害虫活动的逐步进化提供了详细信息,指出了该物种在寻找宿主时使用的重要线索,以及它们适应新生态位的潜在分子机制。