Department of Computational Science, Graduate School of System Informatics, Kobe University, Kobe, Hyogo, 657-8501, Japan.
Laboratory for Developmental Dynamics, RIKEN Center for Biosystems Dynamics Research, Kobe, Hyogo, 650-0047, Japan.
BMC Bioinformatics. 2021 Feb 17;22(1):73. doi: 10.1186/s12859-021-03990-3.
Oocyte quality decreases with aging, thereby increasing errors in fertilization, chromosome segregation, and embryonic cleavage. Oocyte appearance also changes with aging, suggesting a functional relationship between oocyte quality and appearance. However, no methods are available to objectively quantify age-associated changes in oocyte appearance.
We show that statistical image processing of Nomarski differential interference contrast microscopy images can be used to quantify age-associated changes in oocyte appearance in the nematode Caenorhabditis elegans. Max-min value (mean difference between the maximum and minimum intensities within each moving window) quantitatively characterized the difference in oocyte cytoplasmic texture between 1- and 3-day-old adults (Day 1 and Day 3 oocytes, respectively). With an appropriate parameter set, the gray level co-occurrence matrix (GLCM)-based texture feature Correlation (COR) more sensitively characterized this difference than the Max-min Value. Manipulating the smoothness of and/or adding irregular structures to the cytoplasmic texture of Day 1 oocyte images reproduced the difference in Max-min Value but not in COR between Day 1 and Day 3 oocytes. Increasing the size of granules in synthetic images recapitulated the age-associated changes in COR. Manual measurements validated that the cytoplasmic granules in oocytes become larger with aging.
The Max-min value and COR objectively quantify age-related changes in C. elegans oocyte in Nomarski DIC microscopy images. Our methods provide new opportunities for understanding the mechanism underlying oocyte aging.
随着年龄的增长,卵母细胞质量下降,从而增加了受精、染色体分离和胚胎分裂过程中的错误。卵母细胞的外观也随着年龄的增长而发生变化,这表明卵母细胞质量和外观之间存在功能关系。然而,目前还没有方法可以客观地量化卵母细胞外观与年龄相关的变化。
我们表明,对诺玛斯基微分干涉对比显微镜图像进行统计图像处理,可以用于量化线虫秀丽隐杆线虫中与年龄相关的卵母细胞外观变化。最大-最小值(每个移动窗口内最大和最小强度之间的平均差异)定量地表征了 1 日龄和 3 日龄成虫(分别为 Day 1 和 Day 3 卵母细胞)之间卵母细胞质纹理的差异。使用适当的参数集,基于灰度共生矩阵(GLCM)的纹理特征相关性(COR)比最大-最小值更敏感地表征了这种差异。操纵 Day 1 卵母细胞图像的平滑度和/或添加不规则结构可以复制最大-最小值之间的差异,但不能复制 Day 1 和 Day 3 卵母细胞之间的 COR 差异。在合成图像中增加颗粒的大小可以再现 COR 与年龄相关的变化。手动测量验证了卵母细胞中的细胞质颗粒随着年龄的增长而变大。
最大-最小值和 COR 客观地量化了诺玛斯基 DIC 显微镜图像中秀丽隐杆线虫卵母细胞与年龄相关的变化。我们的方法为理解卵母细胞衰老的机制提供了新的机会。