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汉族人群糖尿病性血管性痴呆尿液鉴定的无标记液相色谱-质谱蛋白质组学分析

Label-Free Liquid Chromatography-Mass Spectrometry Proteomic Analysis of Urinary Identification in Diabetic Vascular Dementia in a Han Chinese Population.

作者信息

Chen Ruijuan, Yi Yuanjing, Xiao Wenbiao, Zhong Bowen, Shu Yi, Zhang Le, Zeng Yi

机构信息

Department of Geriatrics, Second Xiangya Hospital, Central South University, Changsha, China.

Department of Neurology, Xiangya Hospital, Central South University, Changsha, China.

出版信息

Front Aging Neurosci. 2021 Feb 1;13:619945. doi: 10.3389/fnagi.2021.619945. eCollection 2021.

Abstract

This study aimed to identify potential diagnostic biomarkers of diabetic vascular dementia (DVD) and unravel the underlying mechanisms using mass spectrometry (MS). Label-free liquid chromatography-tandem mass spectrometry (LC-MS/MS) proteomic analysis was applied to urine samples from four groups, including 14 patients with vascular dementia (VD), 22 patients with type 2 diabetes mellitus (T2DM), 12 patients with DVD, and 21 normal controls (NCs). Searching the MS data by Proteome Discoverer software (ThermoFisher Scientific; Waltham, MA, USA), protein abundances were analyzed qualitatively and quantitatively and compared between these groups. Combining bioinformatics analysis using Gene Ontology (GO), pathway crosstalk analysis using Kyoto Encyclopedia of Genes and Genomes (KEGG), protein-protein interaction (PPI) network analysis using STRING, and literature searching, the differentially expressed proteins (DEPs) of DVD can be comprehensively judged and were further quantified by receiver operating characteristic (ROC) curve methods. The proteomic findings showed quantitative changes in patients with DVD compared to patients with NC, T2DM, and VD groups; among 4,744 identified urine proteins, 1,222, 1,152, and 1,180 proteins displayed quantitative changes unique to DVD vs. NC, T2DM, and VD, respectively, including 481 overlapped common DEPs. Then, nine unique proteins [including HP, SERPIND, ATP5PB, VNN2, ALDH3A1, U2AF2, C6, A0A5C2GRG5 (no name), and A0A5C2FZ29 (no name)] and two composite markers (CM) (A0A5C2GRG5+U2AF2 and U2AF2+C6) were confirmed by a ROC curve method. This study provided an insight into the potential pathogenesis of DVD and elucidated a method for early detection.

摘要

本研究旨在识别糖尿病血管性痴呆(DVD)潜在的诊断生物标志物,并利用质谱(MS)揭示其潜在机制。采用无标记液相色谱 - 串联质谱(LC-MS/MS)蛋白质组学分析方法,对四组尿液样本进行检测,这四组分别为14例血管性痴呆(VD)患者、22例2型糖尿病(T2DM)患者、12例DVD患者以及21例正常对照(NC)。使用Proteome Discoverer软件(美国赛默飞世尔科技公司;马萨诸塞州沃尔瑟姆)搜索质谱数据,对蛋白质丰度进行定性和定量分析,并在这些组之间进行比较。结合使用基因本体(GO)的生物信息学分析、使用京都基因与基因组百科全书(KEGG)的通路串扰分析、使用STRING的蛋白质 - 蛋白质相互作用(PPI)网络分析以及文献检索,可全面判断DVD的差异表达蛋白(DEP),并通过受试者工作特征(ROC)曲线方法对其进行进一步定量分析。蛋白质组学研究结果显示,与NC、T2DM和VD组患者相比,DVD患者存在定量变化;在鉴定出的4744种尿液蛋白质中,分别有1222种、1152种和1180种蛋白质在DVD与NC、T2DM和VD比较时呈现出独特的定量变化,其中包括481种重叠的常见DEP。然后,通过ROC曲线方法确认了9种独特蛋白质[包括HP、SERPIND、ATP5PB、VNN2、ALDH3A1、U2AF2、C6、A0A5C2GRG5(无名称)和A0A5C2FZ29(无名称)]以及两种复合标志物(CM)(A0A5C2GRG5 + U2AF2和U2AF2 + C6)。本研究为DVD的潜在发病机制提供了见解,并阐明了一种早期检测方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/77d4/7882624/b46063cedb71/fnagi-13-619945-g0001.jpg

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