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从头设计跨膜β桶。

De novo design of transmembrane β barrels.

机构信息

Department of Biochemistry, University of Washington, Seattle, WA 98195, USA.

Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA.

出版信息

Science. 2021 Feb 19;371(6531). doi: 10.1126/science.abc8182.

Abstract

Transmembrane β-barrel proteins (TMBs) are of great interest for single-molecule analytical technologies because they can spontaneously fold and insert into membranes and form stable pores, but the range of pore properties that can be achieved by repurposing natural TMBs is limited. We leverage the power of de novo computational design coupled with a "hypothesis, design, and test" approach to determine TMB design principles, notably, the importance of negative design to slow β-sheet assembly. We design new eight-stranded TMBs, with no homology to known TMBs, that insert and fold reversibly into synthetic lipid membranes and have nuclear magnetic resonance and x-ray crystal structures very similar to the computational models. These advances should enable the custom design of pores for a wide range of applications.

摘要

跨膜β-桶蛋白(TMBs)是单分子分析技术的研究重点,因为它们可以自发折叠并插入到膜中形成稳定的孔,但通过重新利用天然 TMBs 来实现的孔性质范围是有限的。我们利用从头计算设计的力量,结合“假设、设计和测试”的方法来确定 TMB 的设计原则,特别是负设计对于减缓β-片层组装的重要性。我们设计了新的八链 TMBs,它们与已知的 TMBs 没有同源性,能够可逆地插入和折叠到合成脂质膜中,并且具有与计算模型非常相似的核磁共振和 X 射线晶体结构。这些进展应该能够为广泛的应用定制设计孔。

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