• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

DFTB 排斥势能参数化的曲率约束样条。

Curvature Constrained Splines for DFTB Repulsive Potential Parametrization.

机构信息

Department of Chemistry - Ångström Laboratory, Uppsala University, Box 538, 751 21 Uppsala, Sweden.

Department of Computing Science, Umeå University, Umeå SE-901 87, Sweden.

出版信息

J Chem Theory Comput. 2021 Mar 9;17(3):1771-1781. doi: 10.1021/acs.jctc.0c01156. Epub 2021 Feb 19.

DOI:10.1021/acs.jctc.0c01156
PMID:33606527
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8023658/
Abstract

The Curvature Constrained Splines (CCS) methodology has been used for fitting repulsive potentials to be used in SCC-DFTB calculations. The benefit of using CCS is that the actual fitting of the repulsive potential is performed through quadratic programming on a convex objective function. This guarantees a unique (for strictly convex) and optimum two-body repulsive potential in a single shot, thereby making the parametrization process robust, and with minimal human effort. Furthermore, the constraints in CCS give the user control to tune the shape of the repulsive potential based on prior knowledge about the system in question. Herein, we developed the method further with new constraints and the capability to handle sparse data. We used the method to generate accurate repulsive potentials for bulk Si polymorphs and demonstrate that for a given Slater-Koster table, which reproduces the experimental band structure for bulk Si in its ground state, we are unable to find one single two-body repulsive potential that can accurately describe the various bulk polymorphs of silicon in our training set. We further demonstrate that to increase transferability, the repulsive potential needs to be adjusted to account for changes in the chemical environment, here expressed in the form of a coordination number. By training a near-sighted Atomistic Neural Network potential, which includes many-body effects but still essentially within the first-neighbor shell, we can obtain full transferability for SCC-DFTB in terms of describing the energetics of different Si polymorphs.

摘要

曲率约束样条 (CCS) 方法已被用于拟合排斥势,以用于 SCC-DFTB 计算。使用 CCS 的好处是,排斥势的实际拟合是通过二次规划在凸目标函数上进行的。这保证了在单次操作中具有独特的(对于严格凸的)和最优的二体排斥势,从而使参数化过程具有鲁棒性,并且需要的人工努力最小。此外,CCS 中的约束使用户能够根据有关所讨论系统的先验知识来调整排斥势的形状。在此,我们进一步开发了具有新约束和处理稀疏数据能力的方法。我们使用该方法为体硅多型体生成了准确的排斥势,并证明对于给定的 Slater-Koster 表,该表再现了体硅基态的实验能带结构,我们无法找到一个单一的二体排斥势可以准确描述我们训练集中的各种体硅多型体。我们进一步证明,为了提高可转移性,需要调整排斥势以适应化学环境的变化,这里以配位数的形式表示。通过训练一种近视原子神经网络势,它包含多体效应,但仍然基本上在第一近邻壳内,我们可以获得 SCC-DFTB 在描述不同硅多型体的能量学方面的完全可转移性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/6572e14c328c/ct0c01156_0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/486c2fb0d23e/ct0c01156_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/4f8233a3f483/ct0c01156_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/42c7a1d81e3c/ct0c01156_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/9fbd1241178e/ct0c01156_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/0a67e267e7f1/ct0c01156_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/d4f785ba03af/ct0c01156_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/e79a7ce3ff57/ct0c01156_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/8b72947d6f30/ct0c01156_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/6572e14c328c/ct0c01156_0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/486c2fb0d23e/ct0c01156_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/4f8233a3f483/ct0c01156_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/42c7a1d81e3c/ct0c01156_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/9fbd1241178e/ct0c01156_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/0a67e267e7f1/ct0c01156_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/d4f785ba03af/ct0c01156_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/e79a7ce3ff57/ct0c01156_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/8b72947d6f30/ct0c01156_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/8023658/6572e14c328c/ct0c01156_0009.jpg

相似文献

1
Curvature Constrained Splines for DFTB Repulsive Potential Parametrization.DFTB 排斥势能参数化的曲率约束样条。
J Chem Theory Comput. 2021 Mar 9;17(3):1771-1781. doi: 10.1021/acs.jctc.0c01156. Epub 2021 Feb 19.
2
Learning to Use the Force: Fitting Repulsive Potentials in Density-Functional Tight-Binding with Gaussian Process Regression.学习运用原力:用高斯过程回归在密度泛函紧束缚中拟合排斥势。
J Chem Theory Comput. 2020 Apr 14;16(4):2181-2191. doi: 10.1021/acs.jctc.9b00975. Epub 2020 Mar 19.
3
An SCC-DFTB Repulsive Potential for Various ZnO Polymorphs and the ZnO-Water System.用于各种氧化锌多晶型物及氧化锌 - 水体系的SCC - DFTB排斥势
J Phys Chem C Nanomater Interfaces. 2013 Aug 22;117(33):17004-17015. doi: 10.1021/jp404095x. Epub 2013 Jul 23.
4
Automatized parametrization of SCC-DFTB repulsive potentials: application to hydrocarbons.SCC-DFTB 排斥势能的自动化参数化:在碳氢化合物中的应用。
J Phys Chem A. 2009 Oct 29;113(43):11866-81. doi: 10.1021/jp902973m.
5
Density-Functional Tight-Binding Parameters for Bulk Zirconium: A Case Study for Repulsive Potentials.块状锆的密度泛函紧束缚参数:排斥势的一个案例研究
J Phys Chem A. 2021 Mar 18;125(10):2184-2196. doi: 10.1021/acs.jpca.0c11178. Epub 2021 Mar 1.
6
DFTB Parameters for the Periodic Table, Part 2: Energies and Energy Gradients from Hydrogen to Calcium.元素周期表的DFTB参数,第2部分:从氢到钙的能量和能量梯度
J Chem Theory Comput. 2015 Nov 10;11(11):5209-18. doi: 10.1021/acs.jctc.5b00702. Epub 2015 Oct 23.
7
Automated Repulsive Parametrization for the DFTB Method.用于密度泛函紧束缚(DFTB)方法的自动排斥参数化
J Chem Theory Comput. 2011 Aug 9;7(8):2654-64. doi: 10.1021/ct200327s. Epub 2011 Jul 18.
8
Accurate SCC-DFTB Parametrization for Bulk Water.准确的体相水的 SCC-DFTB 参数化。
J Chem Theory Comput. 2020 Mar 10;16(3):1768-1778. doi: 10.1021/acs.jctc.9b00816. Epub 2020 Feb 21.
9
Neutral gold clusters studied by the isothermal Brownian-type molecular dynamics and metadynamics molecular dynamics simulations.中性金簇的等温布朗型分子动力学和元动力学分子动力学模拟研究。
J Comput Chem. 2021 Feb 15;42(5):310-325. doi: 10.1002/jcc.26457. Epub 2020 Dec 18.
10
Generalized Density-Functional Tight-Binding Repulsive Potentials from Unsupervised Machine Learning.基于无监督机器学习的广义密度泛函赝势。
J Chem Theory Comput. 2018 May 8;14(5):2341-2352. doi: 10.1021/acs.jctc.7b00933. Epub 2018 Apr 4.

引用本文的文献

1
Recent Developments in DFTB+, a Software Package for Efficient Atomistic Quantum Mechanical Simulations.用于高效原子量子力学模拟的软件包DFTB+的最新进展
J Phys Chem A. 2025 Jun 19;129(24):5373-5390. doi: 10.1021/acs.jpca.5c01146. Epub 2025 Jun 6.
2
Parametrization of Zirconium for DFTB3/3OB: A Pathway to Study Complex Zr-Compounds for Biomedical and Material Science Applications.用于DFTB3/3OB的锆参数化:研究用于生物医学和材料科学应用的复杂锆化合物的途径。
J Comput Chem. 2025 May 30;46(14):e70140. doi: 10.1002/jcc.70140.
3
MLTB: Enhancing Transferability and Extensibility of Density Functional Tight-Binding Theory with Many-body Interaction Corrections.

本文引用的文献

1
Adventures in DFTB: Toward an Automatic Parameterization Scheme.DFTB 探索:迈向自动参数化方案。
J Chem Theory Comput. 2020 Nov 10;16(11):6894-6903. doi: 10.1021/acs.jctc.0c00842. Epub 2020 Oct 29.
2
Accurate Many-Body Repulsive Potentials for Density-Functional Tight Binding from Deep Tensor Neural Networks.基于深度张量神经网络的密度泛函紧束缚精确多体排斥势
J Phys Chem Lett. 2020 Aug 20;11(16):6835-6843. doi: 10.1021/acs.jpclett.0c01307. Epub 2020 Aug 7.
3
DFTB+, a software package for efficient approximate density functional theory based atomistic simulations.
MLTB:通过多体相互作用校正增强密度泛函紧束缚理论的可转移性和可扩展性。
J Chem Theory Comput. 2025 Feb 11;21(3):1089-1097. doi: 10.1021/acs.jctc.4c00858. Epub 2025 Jan 28.
4
Development of Density-Functional Tight-Binding Parameters for the Molecular Dynamics Simulation of Zirconia, Yttria, and Yttria-Stabilized Zirconia.用于氧化锆、氧化钇和氧化钇稳定氧化锆分子动力学模拟的密度泛函紧束缚参数的开发
ACS Omega. 2021 Jul 31;6(31):20530-20548. doi: 10.1021/acsomega.1c02411. eCollection 2021 Aug 10.
DFTB+,一个用于基于高效近似密度泛函理论的原子模拟的软件包。
J Chem Phys. 2020 Mar 31;152(12):124101. doi: 10.1063/1.5143190.
4
Learning to Use the Force: Fitting Repulsive Potentials in Density-Functional Tight-Binding with Gaussian Process Regression.学习运用原力:用高斯过程回归在密度泛函紧束缚中拟合排斥势。
J Chem Theory Comput. 2020 Apr 14;16(4):2181-2191. doi: 10.1021/acs.jctc.9b00975. Epub 2020 Mar 19.
5
Development of Density Functional Tight-Binding Parameters Using Relative Energy Fitting and Particle Swarm Optimization.使用相对能量拟合和粒子群优化方法开发密度泛函紧束缚参数。
J Chem Theory Comput. 2020 Mar 10;16(3):1469-1481. doi: 10.1021/acs.jctc.9b00880. Epub 2020 Feb 20.
6
A Density Functional Tight Binding Layer for Deep Learning of Chemical Hamiltonians.用于化学哈密顿量深度学习的密度泛函紧束缚层。
J Chem Theory Comput. 2018 Nov 13;14(11):5764-5776. doi: 10.1021/acs.jctc.8b00873. Epub 2018 Nov 5.
7
Development of a Multicenter Density Functional Tight Binding Model for Plutonium Surface Hydriding.开发用于钚表面氢化的多中心密度泛函紧束缚模型。
J Chem Theory Comput. 2018 May 8;14(5):2652-2660. doi: 10.1021/acs.jctc.8b00165. Epub 2018 Apr 11.
8
Tight-Binding Approximation-Enhanced Global Optimization.紧束缚近似增强全局优化。
J Chem Theory Comput. 2018 May 8;14(5):2797-2807. doi: 10.1021/acs.jctc.8b00039. Epub 2018 Apr 10.
9
Generalized Density-Functional Tight-Binding Repulsive Potentials from Unsupervised Machine Learning.基于无监督机器学习的广义密度泛函赝势。
J Chem Theory Comput. 2018 May 8;14(5):2341-2352. doi: 10.1021/acs.jctc.7b00933. Epub 2018 Apr 4.
10
Structure and Stability of Molecular Crystals with Many-Body Dispersion-Inclusive Density Functional Tight Binding.包含多体色散的密度泛函紧束缚方法下分子晶体的结构与稳定性
J Phys Chem Lett. 2018 Jan 18;9(2):399-405. doi: 10.1021/acs.jpclett.7b03234. Epub 2018 Jan 10.