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开发和表征一种模块化的 CRISPR 和 RNA 适体介导的碱基编辑系统。

Development and Characterization of a Modular CRISPR and RNA Aptamer Mediated Base Editing System.

机构信息

Department of Pharmacology, Robert Wood Johnson Medical School, Piscataway, New Jersey, USA.

Department of Genetics, Rutgers, The State University of New Jersey-Piscataway, New Jersey, USA.

出版信息

CRISPR J. 2021 Feb;4(1):58-68. doi: 10.1089/crispr.2020.0035.

Abstract

Conventional CRISPR approaches for precision genome editing rely on the introduction of DNA double-strand breaks (DSB) and activation of homology-directed repair (HDR), which is inherently genotoxic and inefficient in somatic cells. The development of base editing (BE) systems that edit a target base without requiring generation of DSB or HDR offers an alternative. Here, we describe a novel BE system called Pin-point that recruits a DNA base-modifying enzyme through an RNA aptamer within the gRNA molecule. Pin-point is capable of efficiently modifying base pairs in the human genome with precision and low on-target indel formation. This system can potentially be applied for correcting pathogenic mutations, installing premature stop codons in pathological genes, and introducing other types of genetic changes for basic research and therapeutic development.

摘要

传统的精确基因组编辑 CRISPR 方法依赖于 DNA 双链断裂 (DSB) 的引入和同源定向修复 (HDR) 的激活,这在体细胞中固有地具有遗传毒性和效率低下。开发不需要产生 DSB 或 HDR 即可编辑靶碱基的碱基编辑 (BE) 系统提供了一种替代方法。在这里,我们描述了一种称为 Pin-point 的新型 BE 系统,该系统通过 gRNA 分子内的 RNA 适体募集一种 DNA 碱基修饰酶。Pin-point 能够高效地精确修饰人类基因组中的碱基对,并且脱靶插入缺失形成率低。该系统可用于纠正致病突变、在病理性基因中安装过早终止密码子以及引入其他类型的遗传变化,用于基础研究和治疗开发。

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本文引用的文献

2
Determinants of Base Editing Outcomes from Target Library Analysis and Machine Learning.
Cell. 2020 Jul 23;182(2):463-480.e30. doi: 10.1016/j.cell.2020.05.037. Epub 2020 Jun 12.
3
A dual-deaminase CRISPR base editor enables concurrent adenine and cytosine editing.
Nat Biotechnol. 2020 Jul;38(7):861-864. doi: 10.1038/s41587-020-0535-y. Epub 2020 Jun 1.
4
Dual base editor catalyzes both cytosine and adenine base conversions in human cells.
Nat Biotechnol. 2020 Jul;38(7):856-860. doi: 10.1038/s41587-020-0527-y. Epub 2020 Jun 1.
6
Evaluation and minimization of Cas9-independent off-target DNA editing by cytosine base editors.
Nat Biotechnol. 2020 May;38(5):620-628. doi: 10.1038/s41587-020-0414-6. Epub 2020 Feb 10.
7
Search-and-replace genome editing without double-strand breaks or donor DNA.
Nature. 2019 Dec;576(7785):149-157. doi: 10.1038/s41586-019-1711-4. Epub 2019 Oct 21.
8
EditR: A Method to Quantify Base Editing from Sanger Sequencing.
CRISPR J. 2018 Jun;1(3):239-250. doi: 10.1089/crispr.2018.0014.
9
Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors.
Nature. 2019 May;569(7756):433-437. doi: 10.1038/s41586-019-1161-z. Epub 2019 Apr 17.
10
Development of a gene-editing approach to restore vision loss in Leber congenital amaurosis type 10.
Nat Med. 2019 Feb;25(2):229-233. doi: 10.1038/s41591-018-0327-9. Epub 2019 Jan 21.

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