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YC2-1,一种引起大豆茎枯病的真菌病原体的基因组序列资源。

Genome Sequence Resource of YC2-1, a Fungal Pathogen Causing Phomopsis Stem Blight in Soybean.

机构信息

Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China.

Key Laboratory of Plant Immunity, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China.

出版信息

Mol Plant Microbe Interact. 2021 Jul;34(7):842-844. doi: 10.1094/MPMI-12-20-0340-A. Epub 2021 Aug 15.

DOI:10.1094/MPMI-12-20-0340-A
PMID:33630650
Abstract
  • disease complex causes considerable yield losses in soybean production worldwide. As one of the major pathogens, T. W. Hobbs (syn. ) is not only the primary agent of Phomopsis seed decay but is also one of the agents of Phomopsis pod and stem blight and Phomopsis stem canker. We performed both PacBio long-read sequencing and Illumina short-read sequencing and obtained a genome assembly for the strain YC2-1, which was isolated from soybean stem with Phomopsis stem blight disease. The 63.1 Mb genome assembly contains 87 scaffolds, with a minimum, maximum, and N scaffold length of 20 kb, 4.6 Mb, and 1.5 Mb respectively, and a total of 17,407 protein-coding genes. The high-quality data expand the genomic resource of species and will provide a solid foundation for a better understanding of their genetic diversity and pathogenic mechanisms.[Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
摘要

该复合疾病在全球范围内给大豆生产造成了相当大的产量损失。作为主要病原菌之一,T.W.霍布斯(同义名)不仅是茎溃疡病菌(Phomopsis stem canker)的主要病原体,也是茎疫病(Phomopsis stem blight)和种腐病菌(Phomopsis seed decay)的病原体之一。我们同时进行了 PacBio 长读测序和 Illumina 短读测序,并获得了一株 YC2-1 的基因组序列,该菌株是从大豆茎溃疡病的病组织中分离出来的。YC2-1 的基因组组装大小为 63.1 Mb,包含 87 个 scaffolds,最小、最大和 N scaffolds 长度分别为 20 kb、4.6 Mb 和 1.5 Mb,共有 17407 个蛋白质编码基因。高质量的数据扩展了 物种的基因组资源,并将为更好地理解其遗传多样性和致病机制提供坚实的基础。[公式:见正文] 版权所有 © 2021 作者。这是一份基于 CC BY-NC-ND 4.0 国际许可协议的开放获取文章。

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