School of Chemistry, National University of Ireland Galway, University Road, Galway H91 TK33, Ireland.
Institute of Molecular Biology, Biocenter, Medical University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria.
J Struct Biol. 2021 Jun;213(2):107711. doi: 10.1016/j.jsb.2021.107711. Epub 2021 Feb 23.
Controlled protein assembly holds great potential in the fabrication of biohybrid materials. However, the structural diversity and complexity of proteins present an obstacle to controlled assembly. Supramolecular chemistry is a possible solution as it offers tools to mediate self-assembly with molecular precision. This paper deals with the calixarene- and zinc-mediated assembly and crystallization of the histidine-rich Penicillium chrysogenum antifungal protein B (PAFB). We report crystal structures of pure PAFB, PAFB in complex with Zn, and the ternary complex of PAFB, Zn and sulfonato-calix[8]arene (sclx). A comparison of the three crystal structures revealed the structural plasticity of PAFB. While the flexible and highly anionic sclx resulted in large molecular weight aggregates of PAFB in solution, diffraction-quality crystals of PAFB-sclx were not obtained. We report crystals of PAFB-Zn-sclx in which a trinuclear zinc cluster occurred adjacent to a calixarene binding site. Interestingly, the combination of sclx complexation and zinc coordination resulted in a porous framework with channels of circa 2 nm diameter. Detailed analysis of the crystal structure highlighted novel molecular recognition features. This research enriches the set of supramolecular interactions available to promote protein assembly.
控制蛋白质组装在生物杂化材料的制备中具有巨大的潜力。然而,蛋白质的结构多样性和复杂性对控制组装构成了障碍。超分子化学是一种可能的解决方案,因为它提供了具有分子精度介导自组装的工具。本文研究了组氨酸丰富的青霉素真菌抗菌蛋白 B(PAFB)的杯芳烃和锌介导的组装和结晶。我们报告了纯 PAFB、与 Zn 结合的 PAFB 以及 PAFB、Zn 和磺基杯[8]芳烃(sclx)的三元复合物的晶体结构。三个晶体结构的比较揭示了 PAFB 的结构可塑性。虽然柔性和高阴离子 sclx 导致 PAFB 在溶液中形成大分子量聚集体,但未获得 PAFB-sclx 的衍射质量晶体。我们报告了 PAFB-Zn-sclx 的晶体,其中三核锌簇位于杯芳烃结合位点附近。有趣的是,sclx 络合和锌配位的组合导致具有约 2nm 直径通道的多孔骨架。晶体结构的详细分析突出了新的分子识别特征。这项研究丰富了可促进蛋白质组装的超分子相互作用。