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用于模块化蛋白质框架的超分子合成子的构建与解构

Making and Breaking Supramolecular Synthons for Modular Protein Frameworks.

作者信息

Mockler Niamh M, Raston Colin L, Crowley Peter B

机构信息

School of Biological and Chemical Sciences, University of Galway, University Road, Galway, H91 TK33, Ireland.

Flinders Institute for Nanoscale Science and Technology, College of Science and Engineering, Flinders University, Bedford Park SA, Adelaide, 5042, Australia.

出版信息

Chemistry. 2025 May 19;31(28):e202500732. doi: 10.1002/chem.202500732. Epub 2025 Apr 16.

Abstract

Anionic calixarenes are useful mediators of protein assembly. In some cases, protein - calixarene cocrystallization yields multiple polymorphs. Ralstonia solanacearum lectin (RSL) cocrystallizes with p-sulfonato-calix[8]arene (sclx) in at least four distinct pH-dependent arrangements. One of these polymorphs, occurring at pH ≤ 4, is a cubic framework in which RSL nodes are connected by sclx dimers. These dimers are supramolecular synthons that occur in distinct crystal structures. Now, we show that the discus-shaped dimer of p-phosphonato-calix[6]arene (pclx), can replace the sclx dimer yielding a new assembly of RSL. Remarkably, just one type of RSL - pclx cocrystal was formed, irrespective of pH or crystallization condition. These results with pclx contrast starkly with sclx and suggest that the calixarene type (e.g., phosphonate versus sulfonate) dictates the synthon durability, which in turn exerts control over protein assembly and polymorph selection. Breaking the pclx dimer required a mutant of RSL with an affinity tag for macrocycle binding. This highly accessible, dicationic site resulted in a significantly altered and porous framework with pclx (but not with sclx). Experiments with ternary mixtures of RSL, pclx, and sclx provide evidence of pH-driven self-sorting. Thus, the "mix-and-match" of protein and supramolecular synthons is a promising approach to protein crystal engineering.

摘要

阴离子杯芳烃是蛋白质组装的有效介质。在某些情况下,蛋白质 - 杯芳烃共结晶会产生多种多晶型物。青枯雷尔氏菌凝集素(RSL)与对磺基杯[8]芳烃(sclx)至少在四种不同的pH依赖性排列中共结晶。这些多晶型物之一出现在pH≤4时,是一种立方框架,其中RSL节点通过sclx二聚体连接。这些二聚体是出现在不同晶体结构中的超分子合成子。现在,我们表明对膦酸基杯[6]芳烃(pclx)的盘状二聚体可以取代sclx二聚体,产生RSL的新组装体。值得注意的是,无论pH值或结晶条件如何,只形成了一种类型的RSL - pclx共晶体。这些关于pclx的结果与sclx形成鲜明对比,表明杯芳烃类型(例如,膦酸酯与磺酸酯)决定了合成子的耐久性,进而对蛋白质组装和多晶型选择进行控制。打破pclx二聚体需要一个带有大环结合亲和标签的RSL突变体。这个高度可及的双阳离子位点导致与pclx形成显著改变的多孔框架(但与sclx不形成)。对RSL、pclx和sclx三元混合物的实验提供了pH驱动的自分类证据。因此,蛋白质和超分子合成子的“混合搭配”是蛋白质晶体工程的一种有前景的方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70ef/12089892/4f7a75899a8c/CHEM-31-e202500732-g004.jpg

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