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通过自动构象复杂分子建模进行计算机辅助催化剂开发:在双膦胺配体中的应用。

Computer-assisted catalyst development via automated modelling of conformationally complex molecules: application to diphosphinoamine ligands.

机构信息

Aramco Americas - Boston Research Center, 400 Technology Square, Cambridge, MA, 02139, USA.

Department of Chemical and Biological Engineering, Tufts University, Medford, MA, 02155, USA.

出版信息

Sci Rep. 2021 Feb 25;11(1):4534. doi: 10.1038/s41598-021-82816-x.

DOI:10.1038/s41598-021-82816-x
PMID:33633152
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7907204/
Abstract

Simulation of conformationally complicated molecules requires multiple levels of theory to obtain accurate thermodynamics, requiring significant researcher time to implement. We automate this workflow using all open-source code (XTBDFT) and apply it toward a practical challenge: diphosphinoamine (PNP) ligands used for ethylene tetramerization catalysis may isomerize (with deleterious effects) to iminobisphosphines (PPNs), and a computational method to evaluate PNP ligand candidates would save significant experimental effort. We use XTBDFT to calculate the thermodynamic stability of a wide range of conformationally complex PNP ligands against isomeriation to PPN (ΔG), and establish a strong correlation between ΔG and catalyst performance. Finally, we apply our method to screen novel PNP candidates, saving significant time by ruling out candidates with non-trivial synthetic routes and poor expected catalytic performance.

摘要

模拟构象复杂的分子需要多层次的理论来获得准确的热力学性质,这需要研究人员花费大量时间来实现。我们使用全开源代码(XTBDFT)来自动化这个工作流程,并将其应用于一个实际挑战中:用于乙烯四聚化催化的二膦亚胺(PNP)配体可能会异构化为亚膦酰胺(PPN)(产生有害影响),而一种评估 PNP 配体候选物的计算方法将节省大量的实验工作。我们使用 XTBDFT 来计算广泛的构象复杂的 PNP 配体相对于异构化为 PPN 的热力学稳定性(ΔG),并建立了 ΔG 与催化剂性能之间的强相关性。最后,我们将我们的方法应用于筛选新型 PNP 候选物,通过排除具有复杂合成路线和预期催化性能不佳的候选物,节省了大量时间。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb40/7907204/929f00e945c2/41598_2021_82816_Fig7_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb40/7907204/929f00e945c2/41598_2021_82816_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb40/7907204/56ef42f08d41/41598_2021_82816_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb40/7907204/49cca7822023/41598_2021_82816_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb40/7907204/2190ebc86bf8/41598_2021_82816_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb40/7907204/03ba3bb2c4d8/41598_2021_82816_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb40/7907204/bcb85f84fe28/41598_2021_82816_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb40/7907204/9d7be6b8d061/41598_2021_82816_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb40/7907204/929f00e945c2/41598_2021_82816_Fig7_HTML.jpg

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