• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用ezRAD测序的叶珊瑚(珊瑚虫纲:石珊瑚目)的完整线粒体基因组。

The complete mitochondrial genome of the lobe coral (Anthozoa: Scleractinia) sequenced using ezRAD.

作者信息

Tisthammer Kaho H, Forsman Zac H, Sindorf Victoria L, Massey Tayler L, Bielecki Coral R, Toonen Robert J

机构信息

Kewalo Marine Laboratory, University of Hawai'i at Mānoa, Honolulu, HI, USA.

Hawaii Institute of Marine Biology, Kaneohe, HI, USA.

出版信息

Mitochondrial DNA B Resour. 2016 Mar 29;1(1):247-249. doi: 10.1080/23802359.2016.1157770.

DOI:10.1080/23802359.2016.1157770
PMID:33644352
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7871842/
Abstract

The mitochondrial genome of the coral was sequenced using ezRAD. The assembled genome consists of 18,647 bp, including 13 protein-coding genes, two ribosomal RNA genes and two transfer RNA genes. The gene arrangement was consistent with other scleractinian coral mitochondrial genomes. The sequence was strikingly similar to , indicating the necessity for further systematic work to resolve phylogenetic relationships in the genus .

摘要

使用ezRAD对珊瑚的线粒体基因组进行了测序。组装后的基因组由18,647个碱基对组成,包括13个蛋白质编码基因、两个核糖体RNA基因和两个转运RNA基因。基因排列与其他石珊瑚线粒体基因组一致。该序列与……惊人地相似,这表明有必要开展进一步的系统研究工作以厘清该属内的系统发育关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a56/7871842/f6d7ba6fb464/TMDN_A_1157770_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a56/7871842/f6d7ba6fb464/TMDN_A_1157770_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a56/7871842/f6d7ba6fb464/TMDN_A_1157770_F0001_B.jpg

相似文献

1
The complete mitochondrial genome of the lobe coral (Anthozoa: Scleractinia) sequenced using ezRAD.使用ezRAD测序的叶珊瑚(珊瑚虫纲:石珊瑚目)的完整线粒体基因组。
Mitochondrial DNA B Resour. 2016 Mar 29;1(1):247-249. doi: 10.1080/23802359.2016.1157770.
2
Complete mitochondrial genome of the scleractinian coral Porites rus.石珊瑚多孔鹿角珊瑚的完整线粒体基因组
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Sep;27(5):3695-6. doi: 10.3109/19401736.2015.1079860. Epub 2016 Feb 9.
3
Using ezRAD to reconstruct the complete mitochondrial genome of (Cnidaria: Scleractinia).使用ezRAD技术重建(刺胞动物门:石珊瑚目)的完整线粒体基因组。
Mitochondrial DNA B Resour. 2018 Feb 9;3(1):173-174. doi: 10.1080/23802359.2018.1437805.
4
The complete mitochondrial DNA of endemic Eastern Pacific coral (Porites panamensis).东太平洋特有珊瑚(巴拿马孔珊瑚)的完整线粒体DNA
Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(1):738-9. doi: 10.3109/19401736.2014.913166. Epub 2014 May 9.
5
Next-generation sequencing yields the complete mitogenome of massive coral, (Cnidaria: Poritidae).下一代测序技术获得了大型珊瑚(刺胞动物门:鹿角珊瑚科)的完整线粒体基因组。
Mitochondrial DNA B Resour. 2016 Feb 1;1(1):8-9. doi: 10.1080/23802359.2015.1137795.
6
The complete mitochondrial genome of (Cnidaria: Scleractinia) obtained using next-generation sequencing.利用下一代测序技术获得的(刺胞动物门:石珊瑚目)的完整线粒体基因组。
Mitochondrial DNA B Resour. 2018 Feb 24;3(1):286-287. doi: 10.1080/23802359.2018.1443852.
7
The complete mitochondrial genome of the .……的完整线粒体基因组
Mitochondrial DNA B Resour. 2020 Jan 27;5(1):912-913. doi: 10.1080/23802359.2020.1715285.
8
Whole-Genome Sequencing Highlights Conservative Genomic Strategies of a Stress-Tolerant, Long-Lived Scleractinian Coral, Porites australiensis Vaughan, 1918.全基因组测序凸显了耐压力、长寿的石珊瑚 Porites australiensis Vaughan, 1918 的保守基因组策略。
Genome Biol Evol. 2021 Dec 1;13(12). doi: 10.1093/gbe/evab270.
9
Phylogenomics of Porites from the Arabian Peninsula.阿拉伯半岛多孔鹿角珊瑚的系统基因组学研究。
Mol Phylogenet Evol. 2021 Aug;161:107173. doi: 10.1016/j.ympev.2021.107173. Epub 2021 Apr 2.
10
Coral hybridization or phenotypic variation? Genomic data reveal gene flow between Porites lobata and P. Compressa.珊瑚杂交还是表型变异?基因组数据揭示了扁脑珊瑚和扁缩珊瑚之间的基因流动。
Mol Phylogenet Evol. 2017 Jun;111:132-148. doi: 10.1016/j.ympev.2017.03.023. Epub 2017 Mar 31.

引用本文的文献

1
Genomic evidence indicates small island-resident populations and sex-biased behaviors of Hawaiian reef Manta Rays.遗传证据表明,夏威夷礁蝠鲼的小岛屿居民种群和性别偏向行为。
BMC Ecol Evol. 2023 Jul 8;23(1):31. doi: 10.1186/s12862-023-02130-0.
2
The complete mitochondrial genome of the Reef Manta Ray, , from Hawaii.来自夏威夷的礁蝠鲼的完整线粒体基因组。
Mitochondrial DNA B Resour. 2023 Feb 2;8(2):197-203. doi: 10.1080/23802359.2023.2167475. eCollection 2023.
3
Calcium homeostasis disruption initiates rapid growth after micro-fragmentation in the scleractinian coral .

本文引用的文献

1
Clues to unraveling the coral species problem: distinguishing species from geographic variation in Porites across the Pacific with molecular markers and microskeletal traits.解开珊瑚物种问题的线索:利用分子标记和微骨骼特征区分太平洋地区孔珊瑚的物种与地理变异。
PeerJ. 2015 Feb 3;3:e751. doi: 10.7717/peerj.751. eCollection 2015.
2
Rfam 12.0: updates to the RNA families database.Rfam 12.0:RNA家族数据库的更新
Nucleic Acids Res. 2015 Jan;43(Database issue):D130-7. doi: 10.1093/nar/gku1063. Epub 2014 Nov 11.
3
The complete mitochondrial DNA of endemic Eastern Pacific coral (Porites panamensis).
造礁石珊瑚微碎片后,钙稳态破坏引发快速生长。
Ecol Evol. 2022 Sep 23;12(9):e9345. doi: 10.1002/ece3.9345. eCollection 2022 Sep.
4
Mitochondrial Genome of Nonmodel Marine Metazoans by Next-Generation Sequencing (NGS).通过下一代测序(NGS)对非模式海洋后生动物的线粒体基因组进行研究。
Methods Mol Biol. 2022;2498:1-18. doi: 10.1007/978-1-0716-2313-8_1.
5
Genetic diversity across the mitochondrial genome of eastern oysters () in the northern Gulf of Mexico.墨西哥湾北部东部牡蛎()线粒体基因组的遗传多样性。
PeerJ. 2021 Sep 28;9:e12205. doi: 10.7717/peerj.12205. eCollection 2021.
6
Host-symbiont coevolution, cryptic structure, and bleaching susceptibility, in a coral species complex (Scleractinia; Poritidae).宿主-共生体协同进化、隐结构和白化易感性在珊瑚物种复合体(石珊瑚目;鹿角珊瑚科)中。
Sci Rep. 2020 Oct 12;10(1):16995. doi: 10.1038/s41598-020-73501-6.
7
Genetic structure is stronger across human-impacted habitats than among islands in the coral .与珊瑚礁中的岛屿相比,人类影响的栖息地之间的遗传结构更强。
PeerJ. 2020 Feb 18;8:e8550. doi: 10.7717/peerj.8550. eCollection 2020.
8
Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model.后生动物(多孔动物门)的分歧时间:新的线粒体基因组的初步见解以及化石在生死钟模型中的纳入。
BMC Evol Biol. 2018 Jul 18;18(1):114. doi: 10.1186/s12862-018-1230-1.
9
A genomic glance through the fog of plasticity and diversification in Pocillopora.透过雾霭般的可塑性和多样化,观察石珊瑚属的基因组。
Sci Rep. 2017 Jul 20;7(1):5991. doi: 10.1038/s41598-017-06085-3.
东太平洋特有珊瑚(巴拿马孔珊瑚)的完整线粒体DNA
Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(1):738-9. doi: 10.3109/19401736.2014.913166. Epub 2014 May 9.
4
Overview of the taxonomy of zooxanthellate Scleractinia.虫黄藻共生石珊瑚目分类概述。
Zool J Linn Soc. 2013 Nov;169(3):485-508. doi: 10.1111/zoj.12076. Epub 2013 Oct 11.
5
ezRAD: a simplified method for genomic genotyping in non-model organisms.ezRAD:一种简化的非模式生物基因组基因分型方法。
PeerJ. 2013 Nov 19;1:e203. doi: 10.7717/peerj.203. eCollection 2013.
6
MITOS: improved de novo metazoan mitochondrial genome annotation.MITOS:改进的从头后生动物线粒体基因组注释。
Mol Phylogenet Evol. 2013 Nov;69(2):313-9. doi: 10.1016/j.ympev.2012.08.023. Epub 2012 Sep 7.
7
No gene flow across the Eastern Pacific Barrier in the reef-building coral Porites lobata.在造礁珊瑚石珊瑚 Porites lobata 中,没有跨越东太平洋屏障的基因流动。
Mol Ecol. 2012 Nov;21(22):5418-33. doi: 10.1111/j.1365-294X.2012.05733.x. Epub 2012 Sep 3.
8
MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.MrBayes 3.2:在大型模型空间中进行高效的贝叶斯系统发育推断和模型选择。
Syst Biol. 2012 May;61(3):539-42. doi: 10.1093/sysbio/sys029. Epub 2012 Feb 22.
9
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.新算法和方法估计最大似然系统发育:评估 PhyML 3.0 的性能。
Syst Biol. 2010 May;59(3):307-21. doi: 10.1093/sysbio/syq010. Epub 2010 Mar 29.
10
Fast and accurate short read alignment with Burrows-Wheeler transform.使用Burrows-Wheeler变换进行快速准确的短读比对。
Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18.