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使用ezRAD技术重建(刺胞动物门:石珊瑚目)的完整线粒体基因组。

Using ezRAD to reconstruct the complete mitochondrial genome of (Cnidaria: Scleractinia).

作者信息

Terraneo Tullia I, Arrigoni Roberto, Benzoni Francesca, Forsman Zac H, Berumen Michael L

机构信息

Red Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, Australia.

出版信息

Mitochondrial DNA B Resour. 2018 Feb 9;3(1):173-174. doi: 10.1080/23802359.2018.1437805.

DOI:10.1080/23802359.2018.1437805
PMID:33474108
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7799562/
Abstract

Corals in the genus are among the major framework builders of reef structures worldwide, yet the genus has been challenging to study due to a lack of informative molecular markers. Here, we used ezRAD sequencing to reconstruct the complete mitochondrial genome of (GenBank accession number MG754069), a widespread coral species endemic to the Red Sea and Gulf of Aden. The gene arrangement of did not differ from other Scleractinia and consisted of 18,658 bp, organized in 13 protein-coding genes, 2 rRNA genes, and 2 tRNA genes. This mitochondrial genome contributes essential data to work towards a better understanding of evolutionary relationships within .

摘要

属的珊瑚是全球珊瑚礁结构的主要框架构建者之一,但由于缺乏信息丰富的分子标记,该属一直难以研究。在这里,我们使用ezRAD测序重建了(GenBank登录号MG754069)的完整线粒体基因组,这是一种红海和亚丁湾特有的广泛分布的珊瑚物种。的基因排列与其他石珊瑚目没有差异,由18,658个碱基对组成,包含13个蛋白质编码基因、2个核糖体RNA基因和2个转运RNA基因。这个线粒体基因组为更好地理解属内的进化关系提供了重要数据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6370/7799562/ac1dd813a527/TMDN_A_1437805_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6370/7799562/ac1dd813a527/TMDN_A_1437805_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6370/7799562/ac1dd813a527/TMDN_A_1437805_F0001_B.jpg

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本文引用的文献

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Mol Phylogenet Evol. 2017 Jun;111:132-148. doi: 10.1016/j.ympev.2017.03.023. Epub 2017 Mar 31.
2
The complete mitochondrial genome of Acanthastrea maxima (Cnidaria, Scleractinia, Lobophylliidae).巨大棘星珊瑚(刺胞动物门,石珊瑚目,叶状珊瑚科)的完整线粒体基因组
Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(2):927-8. doi: 10.3109/19401736.2014.926489. Epub 2014 Jun 18.
3
ezRAD: a simplified method for genomic genotyping in non-model organisms.
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4
Complete mitochondrial genomes of three reef forming corals (Acroporidae, Scleractinia) from Chagos Archipelago, Indian Ocean.来自印度洋查戈斯群岛的三种造礁珊瑚(鹿角珊瑚科,石珊瑚目)的完整线粒体基因组
Biodivers Data J. 2021 Sep 30;9:e72762. doi: 10.3897/BDJ.9.e72762. eCollection 2021.
5
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Mol Biol Evol. 2021 Mar 9;38(3):981-985. doi: 10.1093/molbev/msaa262.
6
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PeerJ. 2020 Jan 24;8:e8455. doi: 10.7717/peerj.8455. eCollection 2020.
7
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6
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.用于检测tRNA和snoRNA的tRNAscan-SE、snoscan和snoGPS网络服务器。
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7
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8
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.一种通过最大似然法估计大型系统发育树的简单、快速且准确的算法。
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9
MrBayes 3: Bayesian phylogenetic inference under mixed models.MrBayes 3:混合模型下的贝叶斯系统发育推断。
Bioinformatics. 2003 Aug 12;19(12):1572-4. doi: 10.1093/bioinformatics/btg180.