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.的完整叶绿体基因组

The complete chloroplast genome of .

作者信息

Wu Zhiqiang, Gu Cuihua, Tembrock Luke R, Sun Cheng

机构信息

Department of Biology, Colorado State University, Fort Collins, CO, USA.

School of Landscape and Architecture, Zhejiang Agriculture and Forestry University, Hangzhou, PR China.

出版信息

Mitochondrial DNA B Resour. 2016 Apr 18;1(1):291-292. doi: 10.1080/23802359.2016.1166082.

Abstract

We report the complete chloroplast DNA (cpDNA) of (Brassicaceae), a less studied relative of by employing next-generation sequencing reads and assembly. The length of the closed circular cpDNA is 154,604 bp with a typical quadripartite structure. The genome is composed of one large single copy and one small single copy regions of 84,209 bp and 17,871 bp, respectively, and separated by a pair of inverted repeats of 26,262 bp in length. The overall GC content is 36.35% and the GC content of the LSC, IRs and SSC regions are 34.12%, 42.30% and 29.38%, separately. The gene content and the number for are the same as other published species in Brassicaceae with 112 annotated known unique genes including 78 protein-coding genes, 30 tRNA genes and four rRNA genes. The complete cpDNA of will provide valuable molecular resources for further phylogenetic and evolutionary analysis in the model genus.

摘要

我们通过利用二代测序读数和从头组装技术,报道了十字花科中一个较少被研究的物种——[物种名称]的完整叶绿体DNA(cpDNA)。闭合环状cpDNA的长度为154,604 bp,具有典型的四分体结构。该基因组由一个84,209 bp的大单拷贝区和一个17,871 bp的小单拷贝区组成,二者由一对长度为26,262 bp的反向重复序列隔开。总体GC含量为36.35%,大单拷贝区、反向重复序列区和小单拷贝区的GC含量分别为34.12%、42.30%和29.38%。[物种名称]的基因组成和数量与十字花科其他已发表物种相同,有112个注释的已知独特基因,包括78个蛋白质编码基因、30个tRNA基因和4个rRNA基因。[物种名称]的完整cpDNA将为模式[属名称]属的进一步系统发育和进化分析提供有价值的分子资源。

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