• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

湖北恩施十字花科植物刘克明、陈立兵、白洪凡及刘伦辉的叶绿体全基因组

Complete chloroplast genome of K.M.Liu, L.B.Chen, H.F.Bai & L.H.Liu (Brassicaceae) in Enshi, Hubei.

作者信息

Liu Xiuqing, Zhang Siying

机构信息

Forestry College, Xinyang Agriculture and Forestry University, Xinyang, China.

Tourism Management College, Xinyang Agriculture and Forestry University, Xinyang, China.

出版信息

Mitochondrial DNA B Resour. 2022 Aug 29;7(8):1574-1576. doi: 10.1080/23802359.2022.2113752. eCollection 2022.

DOI:10.1080/23802359.2022.2113752
PMID:36051365
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9427039/
Abstract

K.M.Liu, L.B.Chen, H.F.Bai & L.H.Liu 2008, also called , belongs to the genus , Brassicaceae. As a plant with selenium enrichment ability, it has high development value. Here, we analyzed the chloroplast genome of . The complete chloroplast genome had a total size of 154,832 bp with a typical quadripartite structure, including a large single-copy region (LSC, 83,908 bp) and a small single-copy region (SSC, 17,938 bp), separated by a pair of inverted repeat regions (IRs, 26,493 bp). Genome annotation showed the chloroplast genome contained 113 unique genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. A total of 143 SSRs were found in the chloroplast genome. Phylogenetic analysis showed that was closer to the and . This chloroplast genome resource will be useful for study of the phylogeny and evolution of in the future.

摘要

刘K.M.、陈L.B.、白H.F.和刘L.H. 2008年,也被称为 ,属于十字花科 属。作为一种具有富硒能力的植物,它具有很高的开发价值。在此,我们分析了 的叶绿体基因组。完整的叶绿体基因组总大小为154,832 bp,具有典型的四分体结构,包括一个大单拷贝区域(LSC,83,908 bp)和一个小单拷贝区域(SSC,17,938 bp),由一对反向重复区域(IRs,26,493 bp)隔开。基因组注释显示叶绿体基因组包含113个独特基因,包括79个蛋白质编码基因、30个tRNA基因和4个rRNA基因。在叶绿体基因组中总共发现了143个简单序列重复(SSRs)。系统发育分析表明 与 和 关系更近。这种叶绿体基因组资源将有助于未来对 的系统发育和进化研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/72df/9427039/03af8afe8fe0/TMDN_A_2113752_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/72df/9427039/03af8afe8fe0/TMDN_A_2113752_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/72df/9427039/03af8afe8fe0/TMDN_A_2113752_F0001_B.jpg

相似文献

1
Complete chloroplast genome of K.M.Liu, L.B.Chen, H.F.Bai & L.H.Liu (Brassicaceae) in Enshi, Hubei.湖北恩施十字花科植物刘克明、陈立兵、白洪凡及刘伦辉的叶绿体全基因组
Mitochondrial DNA B Resour. 2022 Aug 29;7(8):1574-1576. doi: 10.1080/23802359.2022.2113752. eCollection 2022.
2
Comparative Analysis of the Chloroplast Genome of and Phylogenetic Study of .与叶绿体基因组的比较分析及系统发育研究。
Genes (Basel). 2022 Nov 15;13(11):2116. doi: 10.3390/genes13112116.
3
The complete chloroplast genome and phylogenetic analysis of Hook. f. et Thoms., 1861 (Brassicaceae).1861年胡克(Hook. f.)和汤姆森(Thoms.)所著(十字花科)的叶绿体全基因组及系统发育分析
Mitochondrial DNA B Resour. 2022 Nov 15;7(11):1964-1967. doi: 10.1080/23802359.2022.2141081. eCollection 2022.
4
The complete chloroplast genome of an endemic plant to Korea, Nakai.: genome structure and phylogenetic analysis.韩国特有植物中井泽木蓝的完整叶绿体基因组:基因组结构与系统发育分析。
Mitochondrial DNA B Resour. 2021 Aug 25;6(9):2725-2726. doi: 10.1080/23802359.2021.1955769. eCollection 2021.
5
Characterization of the complete chloroplast genome sequence of Bunge(Brassicaceae).十字花科荠苨叶绿体基因组全序列的特征分析
Mitochondrial DNA B Resour. 2022 Jun 2;7(6):936-937. doi: 10.1080/23802359.2022.2079106. eCollection 2022.
6
Structural Characterization and Comparative Analyses of the Chloroplast Genome of Eastern Asian Species (Asian . With.) and Other Species.东亚物种(亚洲……属)及其他物种叶绿体基因组的结构特征与比较分析
Front Biosci (Landmark Ed). 2022 Apr 2;27(4):124. doi: 10.31083/j.fbl2704124.
7
Complete chloroplast genome features and phylogenetic implications of (O. E. Schulz) Nakai.(O. E. 舒尔茨)中井的叶绿体全基因组特征及其系统发育意义
Mitochondrial DNA B Resour. 2021 Aug 25;6(9):2722-2724. doi: 10.1080/23802359.2021.1950067. eCollection 2021.
8
The complete chloroplast genome of ..的完整叶绿体基因组
Mitochondrial DNA B Resour. 2016 Apr 18;1(1):291-292. doi: 10.1080/23802359.2016.1166082.
9
The complete chloroplast genome sequence of watercress (Nasturtium officinale R. Br.): Genome organization, adaptive evolution and phylogenetic relationships in Cardamineae.水芹(Nasturtium officinale R. Br.)完整的叶绿体基因组序列:Cardamineae 中的基因组组织、适应性进化和系统发育关系。
Gene. 2019 May 30;699:24-36. doi: 10.1016/j.gene.2019.02.075. Epub 2019 Mar 5.
10
Complete chloroplast genome and phylogenetic analysis of Liu, Chao, and Chuang, 1977: an endemic species in Taiwan.刘、赵和庄1977年发表的台湾特有物种的完整叶绿体基因组及系统发育分析
Mitochondrial DNA B Resour. 2022 Aug 22;7(8):1507-1509. doi: 10.1080/23802359.2022.2082892. eCollection 2022.

本文引用的文献

1
Characterization of the complete chloroplast genome sequence of Bunge(Brassicaceae).十字花科荠苨叶绿体基因组全序列的特征分析
Mitochondrial DNA B Resour. 2022 Jun 2;7(6):936-937. doi: 10.1080/23802359.2022.2079106. eCollection 2022.
2
Structural Characterization and Comparative Analyses of the Chloroplast Genome of Eastern Asian Species (Asian . With.) and Other Species.东亚物种(亚洲……属)及其他物种叶绿体基因组的结构特征与比较分析
Front Biosci (Landmark Ed). 2022 Apr 2;27(4):124. doi: 10.31083/j.fbl2704124.
3
The complete chloroplast genome of an endemic plant to Korea, Nakai.: genome structure and phylogenetic analysis.
韩国特有植物中井泽木蓝的完整叶绿体基因组:基因组结构与系统发育分析。
Mitochondrial DNA B Resour. 2021 Aug 25;6(9):2725-2726. doi: 10.1080/23802359.2021.1955769. eCollection 2021.
4
Complete chloroplast genome features and phylogenetic implications of (O. E. Schulz) Nakai.(O. E. 舒尔茨)中井的叶绿体全基因组特征及其系统发育意义
Mitochondrial DNA B Resour. 2021 Aug 25;6(9):2722-2724. doi: 10.1080/23802359.2021.1950067. eCollection 2021.
5
The Cardamine enshiensis genome reveals whole genome duplication and insight into selenium hyperaccumulation and tolerance.恩施碎米荠基因组揭示了全基因组复制以及对硒超积累和耐受性的见解。
Cell Discov. 2021 Aug 10;7(1):62. doi: 10.1038/s41421-021-00286-x.
6
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.GetOrganelle:一个快速且通用的工具包,可用于准确从头组装细胞器基因组。
Genome Biol. 2020 Sep 10;21(1):241. doi: 10.1186/s13059-020-02154-5.
7
PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies.PhyloSuite:一个集成的、可扩展的桌面平台,用于简化分子序列数据管理和进化系统发育研究。
Mol Ecol Resour. 2020 Jan;20(1):348-355. doi: 10.1111/1755-0998.13096. Epub 2019 Nov 6.
8
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes.PGA:一个用于叶绿体基因组快速、准确且灵活批量注释的软件包。
Plant Methods. 2019 May 21;15:50. doi: 10.1186/s13007-019-0435-7. eCollection 2019.
9
CPGAVAS2, an integrated plastome sequence annotator and analyzer.CPGAVAS2,一个集成的质体基因组序列注释和分析器。
Nucleic Acids Res. 2019 Jul 2;47(W1):W65-W73. doi: 10.1093/nar/gkz345.
10
MISA-web: a web server for microsatellite prediction.MISA-web:一个用于微卫星预测的网络服务器。
Bioinformatics. 2017 Aug 15;33(16):2583-2585. doi: 10.1093/bioinformatics/btx198.