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探究卤素取代基(溴、氯和氟)对1-(金刚烷-1-基)-3-芳基硫脲衍生物中非共价相互作用的影响:一项理论研究。

Probing the Effect of Halogen Substituents (Br, Cl, and F) on the Non-covalent Interactions in 1-(Adamantan-1-yl)-3-arylthiourea Derivatives: A Theoretical Study.

作者信息

Al-Wahaibi Lamya H, Grandhi Divya Sri, Tawfik Samar S, Al-Shaalan Nora H, Elmorsy Mohammed A, El-Emam Ali A, Percino M Judith, Thamotharan Subbiah

机构信息

Department of Chemistry, College of Sciences, Princess Nourah Bint Abdulrahman University, Riyadh 11671, Saudi Arabia.

Biomolecular Crystallography Laboratory, Department of Bioinformatics, School of Chemical and Biotechnology, SASTRA Deemed University, Thanjavur 613 401, India.

出版信息

ACS Omega. 2021 Feb 10;6(7):4816-4830. doi: 10.1021/acsomega.0c05793. eCollection 2021 Feb 23.

Abstract

The effect of halogen substituents (X = Br, Cl, and F) on the crystal packing and intra- and intermolecular interactions in four adamantane-thiourea hybrid derivatives is investigated using different theoretical tools. The bromo and chloro derivatives exhibit 3D isostructurality as evident from lattice parameters, molecular conformation, and crystal packing. The density functional theory study suggests that the molecular conformation of the parent (unsubstituted) and fluoro derivatives exhibits a stable low energy anti-syn conformation. In contrast, bromo and chloro derivatives adopt stable and relatively high energy minima on their potential energy surfaces. Hirshfeld surface analysis reveals the effect of halogen substituents on the intermolecular contacts. The halogen atoms mainly reduce the contribution of H···H contacts toward crystal packing. PIXEL energy analysis indicates the strong dimer formed by N-H···S hydrogen bonds in all four structures. It also revealed that a vast number of H···H contacts observed in different dimers of these structures either presented along with other conventional interactions or solely stabilize the dimeric topology. The topological parameters for intermolecular interactions in these structures suggest an intermediate bonding character between shared and closed-shell interactions for N-H···S hydrogen bonds in the parent and chloro derivatives. In contrast, the N-H···S hydrogen bond in other structures is of a closed-shell interaction. Among four derivatives, the fluoro derivative is weakly packed in the solid state based on the PIXEL method's lattice energy calculation.

摘要

使用不同的理论工具研究了卤素取代基(X = Br、Cl和F)对四种金刚烷-硫脲杂化衍生物的晶体堆积以及分子内和分子间相互作用的影响。溴代和氯代衍生物表现出三维同构性,从晶格参数、分子构象和晶体堆积可以明显看出。密度泛函理论研究表明,母体(未取代)和氟代衍生物的分子构象呈现出稳定的低能量反式-顺式构象。相比之下,溴代和氯代衍生物在其势能面上采用稳定且能量相对较高的极小值。 Hirshfeld表面分析揭示了卤素取代基对分子间接触的影响。卤素原子主要降低了H···H接触对晶体堆积的贡献。PIXEL能量分析表明,在所有四种结构中均由N-H···S氢键形成强二聚体。研究还表明,在这些结构的不同二聚体中观察到的大量H···H接触,要么与其他传统相互作用一起出现,要么仅稳定二聚体拓扑结构。这些结构中分子间相互作用的拓扑参数表明,母体和氯代衍生物中N-H···S氢键在共享相互作用和闭壳层相互作用之间具有中间键合特征。相比之下,其他结构中的N-H···S氢键属于闭壳层相互作用。在四种衍生物中,基于PIXEL方法的晶格能计算,氟代衍生物在固态下堆积较弱。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fd1/7905817/d3d896d54b6d/ao0c05793_0015.jpg

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