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芳甲基 '-(金刚烷-1-基)哌啶-1-碳硫亚胺酸酯中弱氢键的晶体学和理论探索以及分子对接分析

Crystallographic and Theoretical Exploration of Weak Hydrogen Bonds in Arylmethyl '-(adamantan-1-yl)piperidine-1-carbothioimidates and Molecular Docking Analysis.

作者信息

Al-Mutairi Aamal A, Alagappan Kowsalya, Blacque Olivier, Al-Alshaikh Monirah A, El-Emam Ali A, Percino M Judith, Thamotharan Subbiah

机构信息

Department of Chemistry, College of Sciences, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh 11623, Saudi Arabia.

Biomolecular Crystallography Laboratory, Department of Bioinformatics, School of Chemical and Biotechnology, SASTRA Deemed University, Thanjavur 613401, India.

出版信息

ACS Omega. 2021 Oct 7;6(41):27026-27037. doi: 10.1021/acsomega.1c03559. eCollection 2021 Oct 19.

DOI:10.1021/acsomega.1c03559
PMID:34693122
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8529591/
Abstract

Crystal structures of two potential chemotherapeutic agents, namely 4-nitrobenzyl '-(adamantan-1-yl)piperidine-1-carbothioimidate and 4-bromobenzyl '-(adamantan-1-yl)piperidine-1-carbothioimidate , have been analyzed in detail. X-ray analysis reveals that the molecular conformations of these compounds are strikingly different. These two structures are compared with two of their closely related structures. In the related structures, morpholine replaces piperidine. Based on the Hirshfeld surface analysis and two-dimensional (2D) fingerprint plots, we describe the effects of piperidine/morpholine and Br/NO groups on the intermolecular interactions. An analysis of the CLP-PIXEL energy provides insight into the energetics of the dimers observed in the title compounds and their related structures. Compound stabilizes with bifurcated C-H···S, C-H···O, and O(lp)···C(π) interactions, whereas compound stabilizes with C-H···N, C-H···Br, and C-H···C interactions. The energy frameworks for the crystal structures of the title compounds reveal differences. The atoms-in-molecules (AIM) analysis was performed to confirm the intermolecular interactions found in the crystal structures of and . Additionally, docking analysis suggests that the title compounds bind at the active site of human sphingosine kinase 1, a well-known cancer target.

摘要

两种潜在化疗药物,即4-硝基苄基 -(金刚烷-1-基)哌啶-1-碳硫亚胺酸酯和4-溴苄基 -(金刚烷-1-基)哌啶-1-碳硫亚胺酸酯的晶体结构已被详细分析。X射线分析表明,这些化合物的分子构象显著不同。将这两种结构与其两个密切相关的结构进行了比较。在相关结构中,吗啉取代了哌啶。基于 Hirshfeld 表面分析和二维(2D)指纹图谱,我们描述了哌啶/吗啉和Br/NO基团对分子间相互作用的影响。对CLP-PIXEL能量的分析为观察到的标题化合物及其相关结构中的二聚体能量学提供了见解。化合物 通过分叉的C-H···S、C-H···O和O(lp)···C(π)相互作用而稳定,而化合物 通过C-H···N、C-H···Br和C-H···C相互作用而稳定。标题化合物晶体结构的能量框架显示出差异。进行了分子中的原子(AIM)分析,以确认 和 晶体结构中发现的分子间相互作用。此外,对接分析表明,标题化合物结合在人鞘氨醇激酶1的活性位点,人鞘氨醇激酶1是一个著名的癌症靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97d0/8529591/331554b01aa0/ao1c03559_0009.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97d0/8529591/cf104de65546/ao1c03559_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97d0/8529591/331554b01aa0/ao1c03559_0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97d0/8529591/6cd8a39ef67f/ao1c03559_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97d0/8529591/b20cec72dcb1/ao1c03559_0010.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97d0/8529591/64c1e2c4bdea/ao1c03559_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97d0/8529591/1a9cb6d94aa2/ao1c03559_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97d0/8529591/a43f0d544591/ao1c03559_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97d0/8529591/5899b20a407a/ao1c03559_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97d0/8529591/cf104de65546/ao1c03559_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97d0/8529591/331554b01aa0/ao1c03559_0009.jpg

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