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对β-取代-5-(金刚烷-1-基)-1,3,4-噻二唑-2-胺中非共价相互作用性质的定量评估:来自晶体学和QTAIM分析的见解。

Quantitative assessment of the nature of noncovalent interactions in -substituted-5-(adamantan-1-yl)-1,3,4-thiadiazole-2-amines: insights from crystallographic and QTAIM analysis.

作者信息

El-Emam Ali A, Saveeth Kumar Elangovan, Janani Krishnakumar, Al-Wahaibi Lamya H, Blacque Olivier, El-Awady Mohamed I, Al-Shaalan Nora H, Percino M Judith, Thamotharan Subbiah

机构信息

Department of Medicinal Chemistry, Faculty of Pharmacy, Mansoura University Mansoura 35516 Egypt.

Biomolecular Crystallography Laboratory, Department of Bioinformatics, School of Chemical and Biotechnology, SASTRA Deemed University Thanjavur-613401 India

出版信息

RSC Adv. 2020 Mar 6;10(17):9840-9853. doi: 10.1039/d0ra00733a.

Abstract

Three adamantane-1,3,4-thiadiazole hybrid derivatives namely; -ethyl-5-(adamantan-1-yl)-1,3,4-thiadiazole-2-amine I, -(4-fluorophenyl)-5-(adamantan-1-yl)-1,3,4-thiadiazole-2-amine II and (4-bromophenyl)-5-(adamantan-1-yl)--1,3,4-thiadiazole-2-amine III, have been synthesized and crystal structures have been determined at low temperature. The structures revealed that the orientation of the amino group is different in non-halogenated structures. Intra- and intermolecular interactions were characterized on the basis of the quantum theory of atoms-in-molecules (QTAIM) approach. Intermolecular interaction energies for different molecular pairs have been obtained using the PIXEL method. Hirshfeld surface analysis and 2D-fingerprint plots revealed that the relative contributions of different non-covalent interactions are comparable in compounds with halogen (Br and F) substitutions. Crystal structures of II and III show isostructural behaviour with 1D supramolecular constructs. In all three structures, the N-H⋯N hydrogen bond was found to be stronger among other noncovalent interactions. The H-H bonding showed a closed shell in nature and played significant roles in the stabilization of these crystal structures.

摘要

三种金刚烷-1,3,4-噻二唑杂化衍生物,即:5-(金刚烷-1-基)-1,3,4-噻二唑-2-胺乙酯I、5-(金刚烷-1-基)-1-(4-氟苯基)-1,3,4-噻二唑-2-胺II和5-(金刚烷-1-基)-1-(4-溴苯基)-1,3,4-噻二唑-2-胺III,已被合成,并在低温下测定了晶体结构。结构表明,在非卤代结构中氨基的取向不同。基于分子中的原子量子理论(QTAIM)方法对分子内和分子间相互作用进行了表征。使用PIXEL方法获得了不同分子对的分子间相互作用能。 Hirshfeld表面分析和二维指纹图谱表明,在具有卤素(Br和F)取代的化合物中,不同非共价相互作用的相对贡献相当。II和III的晶体结构显示出具有一维超分子结构的同构行为。在所有三种结构中,发现N-H⋯N氢键在其他非共价相互作用中更强。H-H键在本质上表现为闭壳层,在这些晶体结构的稳定中起重要作用。

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