Amity Institute of Molecular Medicine and Stem Cell Research (AIMMSCR), Amity University, Noida, India.
J Biomol Struct Dyn. 2022 Sep;40(14):6671-6681. doi: 10.1080/07391102.2021.1889665. Epub 2021 Mar 1.
The disease COVID-19 has caused heavy socio-economic burden and there is immediate need to control it. The disease is caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus. The viral entry into human cell depends on the attachment of spike (S) protein its receptor binding domain (RBD) to human cell receptor angiotensin-converting enzyme 2 (hACE2). Thus, blocking the virus attachment to hACE2 could serve as potential therapeutics for viral infection. We have designed a peptide inhibitor (ΔABP-α2) targeting the RBD of S protein using approach. Docking studies and computed affinities suggested that peptide inhibitor binds at the RBD with ∼95-fold higher affinity than hACE2. Molecular dynamics (MD) simulation confirms the stable binding of inhibitor to hACE2. Immunoinformatics studies suggest non-immunogenic and non-toxic nature of peptide. Thus, the proposed peptide could serve as potential blocker for viral attachment.Communicated by Ramaswamy H. Sarma.
新型冠状病毒病(COVID-19)造成了沉重的社会经济负担,急需加以控制。该病由严重急性呼吸系统综合征冠状病毒 2(SARS-CoV-2)病毒引起。病毒进入人体细胞依赖于刺突(S)蛋白与其受体结合域(RBD)与人体细胞受体血管紧张素转化酶 2(hACE2)的结合。因此,阻断病毒与 hACE2 的附着可能成为病毒感染的潜在治疗方法。我们使用 方法设计了一种针对 S 蛋白 RBD 的肽类抑制剂(ΔABP-α2)。对接研究和计算亲和力表明,肽抑制剂与 RBD 的结合亲和力比 hACE2 高约 95 倍。分子动力学(MD)模拟证实了抑制剂与 hACE2 的稳定结合。免疫信息学研究表明该肽具有非免疫原性和非毒性。因此,所提出的肽类可能成为病毒附着的潜在阻滞剂。Ramaswamy H. Sarma 通讯。