Anastomosis Group 4 菌株 Rhs4ca 的基因组序列，该菌为田间作物中广泛存在的植物病原菌。
Genome Sequence of Anastomosis Group 4 Strain Rhs4ca, a Widespread Pathomycete in Field Crops.
机构信息
Jilin Academy of Agricultural Sciences, Jilin Key Laboratory of Agricultural Microbiology; Key Laboratory of Integrated Pest Management on Crops in Northeast, Ministry of Agriculture, Changchun, Jilin Province 130033, China.
State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China.
出版信息
Mol Plant Microbe Interact. 2021 Jul;34(7):826-829. doi: 10.1094/MPMI-12-20-0362-A. Epub 2021 Aug 19.
is an important soil-borne fungal pathogen that causes serious diseases on many agricultural crops and vegetables. Here, we report a complete genome assembly of AG4 (assembly: 45.47 Mb; contig N: 1.56 Mb), using a combination of Illumina paired-end and PacBio long-read sequencing data. A total of 267 noncoding RNAs and 11,592 genes were predicted, including 109 genes associated with carbohydrate-active enzymes and 2,488 genes involved in host-pathogen interactions. The complete genome of AG4 represents a valuable base for studying interactions between host plants and pathogenic fungi and to search for potential antimicrobial targets.[Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
是一种重要的土传真菌病原体，可导致许多农作物和蔬菜发生严重病害。在这里，我们报道了 AG4（组装大小：45.47 Mb；N 个 contig：1.56 Mb）的全基因组序列，使用了 Illumina 配对末端和 PacBio 长读测序数据的组合。共预测了 267 个非编码 RNA 和 11592 个基因，其中包括 109 个与碳水化合物活性酶相关的基因和 2488 个参与宿主-病原体相互作用的基因。AG4 的全基因组为研究宿主植物与致病真菌的相互作用以及寻找潜在的抗菌靶标提供了宝贵的基础。
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