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粟瘟病菌丝核菌融合群4菌株AG4-JY的基因组资源

Genome Resource of Anastomosis Group 4 Strain AG4-JY, a Pathomycete of Sheath Blight of Foxtail Millet.

作者信息

Liu Yuwei, Jia Lixia, Zhou Cheng, Mao Yanan, Shen Shen, Hao Zhimin, Li Zhiyong

机构信息

State Key Laboratory of North China Crop Improvement and Regulation, Hebei Bioinformatic Utilization and Technological Innovation Center for Agricultural Microbes, Hebei Agricultural University, Baoding, China.

Institute of Agricultural Information and Economics, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang, China.

出版信息

Plant Dis. 2023 Mar;107(3):926-928. doi: 10.1094/PDIS-07-22-1542-A. Epub 2023 Jan 4.

Abstract

The basidiomycetous fungus Kühn (teleomorph [Frank] Donk) is a fungal pathogen that causes various diseases on economically important crops, such as foxtail millet, maize, and rice. Using the PacBio Sequel platform, we assembled a draft genome of an strain AG4-JY that was isolated from foxtail millet with sheath blight at the stem. The genome was approximately 43.43 Mb on 53 scaffolds, with a scaffold N50 length of 2.10 Mb. In all, 10,545 genes and 179 noncoding RNAs were predicted, and 10,488 genes had at least one database annotation. In addition, the proteins encoded by 709 genes were predicted as secretory proteins. The AG4-JY genome sequence provides a valuable resource for understanding the interactions between and foxtail millet and controls sheath blight in the world.

摘要

担子菌纲真菌 Kühn(有性型 [Frank] Donk)是一种真菌病原体,可在经济上重要的作物上引发多种疾病,如谷子、玉米和水稻。利用PacBio Sequel平台,我们组装了一个从茎部患有纹枯病的谷子中分离出的AG4-JY菌株的基因组草图。该基因组在53个支架上约为43.43 Mb,支架N50长度为2.10 Mb。总共预测了10,545个基因和179个非编码RNA,其中10,488个基因至少有一个数据库注释。此外,预测709个基因编码的蛋白质为分泌蛋白。AG4-JY基因组序列为理解[真菌名称未完整给出]与谷子之间的相互作用以及控制全球纹枯病提供了宝贵资源。

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