Suppr超能文献

通过相关光电子显微镜成像VIPER标记的细胞蛋白

Imaging VIPER-labeled Cellular Proteins by Correlative Light and Electron Microscopy.

作者信息

Doh Julia K, Chang Young Hwan, Enns Caroline A, Lόpez Claudia S, Beatty Kimberly E

机构信息

Department of Biomedical Engineering, Oregon Health & Science University, Portland, Oregon 97239, USA.

OHSU Center for Spatial Systems Biomedicine, Oregon Health & Science University, Portland, Oregon 97239, USA.

出版信息

Bio Protoc. 2019 Nov 5;9(21):e3414. doi: 10.21769/BioProtoc.3414.

Abstract

Advances in fluorescence microscopy (FM), electron microscopy (EM), and correlative light and EM (CLEM) offer unprecedented opportunities for studying diverse proteins and nanostructures involved in fundamental cell biology. It is now possible to visualize and quantify the spatial organization of cellular proteins and other macromolecules by FM, EM, and CLEM. However, tagging and tracking cellular proteins across size scales is restricted by the scarcity of methods for attaching appropriate reporter chemistries to target proteins. Namely, there are few genetic tags compatible with EM. To overcome these issues we developed Versatile Interacting Peptide (VIP) tags, genetically-encoded peptide tags that can be used to image proteins by fluorescence and EM. VIPER, a VIP tag, can be used to label cellular proteins with bright, photo-stable fluorophores for FM or electron-dense nanoparticles for EM. In this Bio-Protocol, we provide an instructional guide for implementing VIPER for imaging a cell-surface receptor by CLEM. This protocol is complemented by two other Bio-Protocols outlining the use of VIPER ( Doh , 2019a and 2019b).

摘要

荧光显微镜(FM)、电子显微镜(EM)以及相关光电子显微镜(CLEM)技术的进步为研究基础细胞生物学中涉及的多种蛋白质和纳米结构提供了前所未有的机遇。现在,通过FM、EM和CLEM技术可以对细胞蛋白质和其他大分子的空间组织进行可视化和定量分析。然而,跨尺寸尺度标记和追踪细胞蛋白质受到将合适的报告化学物质连接到目标蛋白质的方法稀缺的限制。也就是说,与EM兼容的遗传标签很少。为了克服这些问题,我们开发了通用相互作用肽(VIP)标签,这是一种基因编码的肽标签,可用于通过荧光和EM对蛋白质进行成像。VIPER作为一种VIP标签,可用于用明亮、光稳定的荧光团标记细胞蛋白质以用于FM,或用电子致密纳米颗粒标记以用于EM。在本生物协议中,我们提供了一份使用VIPER通过CLEM对细胞表面受体进行成像的操作指南。该协议由另外两份概述VIPER使用方法的生物协议(Doh,2019a和2019b)补充。

相似文献

1
Imaging VIPER-labeled Cellular Proteins by Correlative Light and Electron Microscopy.
Bio Protoc. 2019 Nov 5;9(21):e3414. doi: 10.21769/BioProtoc.3414.
2
VIPER is a genetically encoded peptide tag for fluorescence and electron microscopy.
Proc Natl Acad Sci U S A. 2018 Dec 18;115(51):12961-12966. doi: 10.1073/pnas.1808626115. Epub 2018 Dec 5.
3
Implementing VIPER for Imaging Cellular Proteins by Fluorescence Microscopy.
Bio Protoc. 2019 Nov 5;9(21). doi: 10.21769/bioprotoc.3413.
4
Generation of CoilR Probe Peptides for VIPER-labeling of Cellular Proteins.
Bio Protoc. 2019 Nov 5;9(21):e3412. doi: 10.21769/BioProtoc.3412.
5
Characteristics of genetic tags for correlative light and electron microscopy.
Curr Opin Chem Biol. 2023 Oct;76:102369. doi: 10.1016/j.cbpa.2023.102369. Epub 2023 Jul 13.
6
A workflow for 3D-CLEM investigating liver tissue.
J Microsc. 2021 Mar;281(3):231-242. doi: 10.1111/jmi.12967. Epub 2020 Oct 27.
8
Epon Post Embedding Correlative Light and Electron Microscopy.
J Vis Exp. 2024 Jan 12(203). doi: 10.3791/66141.
9
3D HDO-CLEM: cellular compartment analysis by correlative light-electron microscopy on cryosection.
Methods Cell Biol. 2012;111:95-115. doi: 10.1016/B978-0-12-416026-2.00006-6.
10
Live correlative light-electron microscopy to observe molecular dynamics in high resolution.
Microscopy (Oxf). 2016 Aug;65(4):296-308. doi: 10.1093/jmicro/dfw024. Epub 2016 Jul 6.

引用本文的文献

1
Orthogonal Versatile Interacting Peptide Tags for Imaging Cellular Proteins.
Biochemistry. 2023 Jun 6;62(11):1735-1743. doi: 10.1021/acs.biochem.2c00712. Epub 2023 May 11.
2
Generation of CoilR Probe Peptides for VIPER-labeling of Cellular Proteins.
Bio Protoc. 2019 Nov 5;9(21):e3412. doi: 10.21769/BioProtoc.3412.
3
Implementing VIPER for Imaging Cellular Proteins by Fluorescence Microscopy.
Bio Protoc. 2019 Nov 5;9(21). doi: 10.21769/bioprotoc.3413.

本文引用的文献

1
Generation of CoilR Probe Peptides for VIPER-labeling of Cellular Proteins.
Bio Protoc. 2019 Nov 5;9(21):e3412. doi: 10.21769/BioProtoc.3412.
2
Implementing VIPER for Imaging Cellular Proteins by Fluorescence Microscopy.
Bio Protoc. 2019 Nov 5;9(21). doi: 10.21769/bioprotoc.3413.
3
VIPER is a genetically encoded peptide tag for fluorescence and electron microscopy.
Proc Natl Acad Sci U S A. 2018 Dec 18;115(51):12961-12966. doi: 10.1073/pnas.1808626115. Epub 2018 Dec 5.
4
From single-molecule spectroscopy to super-resolution imaging of the neuron: a review.
Methods Appl Fluoresc. 2016 Jun 27;4(2):022004. doi: 10.1088/2050-6120/4/2/022004.
5
6
Whole-brain serial-section electron microscopy in larval zebrafish.
Nature. 2017 May 18;545(7654):345-349. doi: 10.1038/nature22356. Epub 2017 May 10.
7
Endocytic proteins are partitioned at the edge of the clathrin lattice in mammalian cells.
Nat Cell Biol. 2017 Apr;19(4):352-361. doi: 10.1038/ncb3498. Epub 2017 Mar 27.
8
Versatile Interacting Peptide (VIP) Tags for Labeling Proteins with Bright Chemical Reporters.
Chembiochem. 2017 Mar 2;18(5):470-474. doi: 10.1002/cbic.201600627. Epub 2017 Jan 25.
9
FluoroNanogold: an important probe for correlative microscopy.
J Chem Biol. 2015 Aug 25;8(4):129-42. doi: 10.1007/s12154-015-0145-1. eCollection 2015 Oct.
10
Fast and precise targeting of single tumor cells in vivo by multimodal correlative microscopy.
J Cell Sci. 2016 Jan 15;129(2):444-56. doi: 10.1242/jcs.181842. Epub 2015 Dec 11.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验