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iNKT 细胞的转录组和染色质景观由亚群分化和抗原暴露塑造。

Transcriptome and chromatin landscape of iNKT cells are shaped by subset differentiation and antigen exposure.

机构信息

La Jolla Institute for Immunology, La Jolla, CA, USA.

University of Southampton, Faculty of Medicine, Southampton, UK.

出版信息

Nat Commun. 2021 Mar 4;12(1):1446. doi: 10.1038/s41467-021-21574-w.

DOI:10.1038/s41467-021-21574-w
PMID:33664261
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7933435/
Abstract

Invariant natural killer T cells (iNKT cells) differentiate into thymic and peripheral NKT1, NKT2 and NKT17 subsets. Here we use RNA-seq and ATAC-seq analyses and show iNKT subsets are similar, regardless of tissue location. Lung iNKT cell subsets possess the most distinct location-specific features, shared with other innate lymphocytes in the lung, possibly consistent with increased activation. Following antigenic stimulation, iNKT cells undergo chromatin and transcriptional changes delineating two populations: one similar to follicular helper T cells and the other NK or effector like. Phenotypic analysis indicates these changes are observed long-term, suggesting that iNKT cells gene programs are not fixed, but they are capable of chromatin remodeling after antigen to give rise to additional subsets.

摘要

不变自然杀伤 T 细胞 (iNKT 细胞) 分化为胸腺和外周 NKT1、NKT2 和 NKT17 亚群。在这里,我们使用 RNA-seq 和 ATAC-seq 分析表明,iNKT 亚群是相似的,而与组织位置无关。肺 iNKT 细胞亚群具有最独特的位置特异性特征,与肺中的其他固有淋巴细胞共享,可能与增加的激活一致。在抗原刺激后,iNKT 细胞经历染色质和转录变化,划定两个群体:一个类似于滤泡辅助 T 细胞,另一个类似于 NK 或效应细胞。表型分析表明,这些变化是长期观察到的,这表明 iNKT 细胞的基因程序不是固定的,但它们能够在抗原后重塑染色质,从而产生额外的亚群。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9db5/7933435/2519d8efd794/41467_2021_21574_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9db5/7933435/101550b0598b/41467_2021_21574_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9db5/7933435/52bb8b68f83e/41467_2021_21574_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9db5/7933435/1a0848217762/41467_2021_21574_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9db5/7933435/6db8c8f53e2e/41467_2021_21574_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9db5/7933435/92978a397e91/41467_2021_21574_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9db5/7933435/2519d8efd794/41467_2021_21574_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9db5/7933435/101550b0598b/41467_2021_21574_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9db5/7933435/52bb8b68f83e/41467_2021_21574_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9db5/7933435/1a0848217762/41467_2021_21574_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9db5/7933435/6db8c8f53e2e/41467_2021_21574_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9db5/7933435/92978a397e91/41467_2021_21574_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9db5/7933435/2519d8efd794/41467_2021_21574_Fig6_HTML.jpg

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