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NMR 共振分配用于来自 Xenorhabdus cabanillasii 的 PAX 肽产生 NRPS 的对接结构域对与附着的硫醇化结构域。

NMR resonance assignments for a docking domain pair with an attached thiolation domain from the PAX peptide-producing NRPS from Xenorhabdus cabanillasii.

机构信息

Molecular Biotechnology, Institute of Molecular Biosciences, Goethe University Frankfurt, 60438, Frankfurt am Main, Germany.

Institute of Molecular Biosciences and Center for Biomolecular Magnetic Resonance (BMRZ), Goethe University Frankfurt, 60438, Frankfurt am Main, Germany.

出版信息

Biomol NMR Assign. 2021 Apr;15(1):229-234. doi: 10.1007/s12104-021-10010-1. Epub 2021 Mar 5.

Abstract

Non-ribosomal peptide synthetases (NRPSs) are large multienzyme machineries. They synthesize numerous important natural products starting from amino acids. For peptide synthesis functionally specialized NRPS modules interact in a defined manner. Individual modules are either located on a single or on multiple different polypeptide chains. The "peptide-antimicrobial-Xenorhabdus" (PAX) peptide producing NRPS PaxS from Xenorhabdus bacteria consists of the three proteins PaxA, PaxB and PaxC. Different docking domains (DDs) located at the N-termini of PaxB and PaxC and at the C-termini of PaxA and BaxB mediate specific non-covalent interactions between them. The N-terminal docking domains precede condensation domains while the C-terminal docking domains follow thiolation domains. The binding specificity of individual DDs is important for the correct assembly of multi-protein NRPS systems. In many multi-protein NRPS systems the docking domains are sufficient to mediate the necessary interactions between individual protein chains. However, it remains unclear if this is a general feature for all types of structurally different docking domains or if the neighboring domains in some cases support the function of the docking domains. Here, we report the H, C and  N NMR resonance assignments for a C-terminal di-domain construct containing a thiolation (T) domain followed by a C-terminal docking domain (DD) from PaxA and for its binding partner - the N-terminal docking domain (DD) from PaxB from the Gram-negative entomopathogenic bacterium Xenorhabdus cabanillasii JM26 in their free states and for a 1:1 complex formed by the two proteins. These NMR resonance assignments will facilitate further structural and dynamic studies of this protein complex.

摘要

非核糖体肽合成酶(NRPSs)是大型多酶复合物。它们从氨基酸开始合成许多重要的天然产物。对于肽合成,功能专门化的 NRPS 模块以特定的方式相互作用。单个模块要么位于单个多肽链上,要么位于多个不同的多肽链上。来自 Xenorhabdus 细菌的“肽-抗菌-Xenorhabdus”(PAX)肽产生 NRPS PaxS 由三个蛋白质 PaxA、PaxB 和 PaxC 组成。位于 PaxB 和 PaxC N 端以及 PaxA 和 BaxB C 端的不同对接域(DD)介导它们之间特定的非共价相互作用。N 端对接域位于缩合域之前,而 C 端对接域位于硫醇化域之后。单个 DD 的结合特异性对于多蛋白 NRPS 系统的正确组装很重要。在许多多蛋白 NRPS 系统中,对接域足以介导各个蛋白质链之间的必要相互作用。然而,目前尚不清楚这是否是所有结构不同的对接域的一般特征,或者在某些情况下,相邻结构域是否支持对接域的功能。在这里,我们报告了含有硫醇化(T)域的 C 端双域结构域构建体的 H、C 和 N NMR 共振分配及其结合伴侣的 N 端对接域(DD)的自由态共振分配来自革兰氏阴性昆虫病原细菌 Xenorhabdus cabanillasii JM26 的 PaxA 和 1:1 复合物形成由两种蛋白质组成。这些 NMR 共振分配将有助于进一步研究该蛋白质复合物的结构和动态。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47c4/7973640/e847d179a749/12104_2021_10010_Fig1_HTML.jpg

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