De Vega Jose J, Teshome Abel, Klaas Manfred, Grant Jim, Finnan John, Barth Susanne
Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.
John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Biotechnol Biofuels. 2021 Mar 6;14(1):60. doi: 10.1186/s13068-021-01915-z.
Miscanthus is a commercial lignocellulosic biomass crop owing to its high biomass productivity, resilience and photosynthetic capacity at low temperature. These qualities make Miscanthus a particularly good candidate for temperate marginal land, where yields can be limited by insufficient or excessive water supply. Differences in response to water stress have been observed among Miscanthus species, which correlated to origin. In this study, we compared the physiological and molecular responses among Miscanthus species under excessive (flooded) and insufficient (drought) water supply in glasshouse conditions.
A significant biomass loss was observed under drought conditions in all genotypes. M. x giganteus showed a lower reduction in biomass yield under drought conditions compared to the control than the other species. Under flooded conditions, biomass yield was as good as or better than control conditions in all species. 4389 of the 67,789 genes (6.4%) in the reference genome were differentially expressed during drought among four Miscanthus genotypes from different species. We observed the same biological processes were regulated across Miscanthus species during drought stress despite the DEGs being not similar. Upregulated differentially expressed genes were significantly involved in sucrose and starch metabolism, redox, and water and glycerol homeostasis and channel activity. Multiple copies of the starch metabolic enzymes BAM and waxy GBSS-I were strongly up-regulated in drought stress in all Miscanthus genotypes, and 12 aquaporins (PIP1, PIP2 and NIP2) were also up-regulated in drought stress across genotypes.
Different phenotypic responses were observed during drought stress among Miscanthus genotypes from different species, supporting differences in genetic adaption. The low number of DEGs and higher biomass yield in flooded conditions supported Miscanthus use in flooded land. The molecular processes regulated during drought were shared among Miscanthus species and consistent with functional categories known to be critical during drought stress in model organisms. However, differences in the regulated genes, likely associated with ploidy and heterosis, highlighted the value of exploring its diversity for breeding.
芒草是一种商业化的木质纤维素生物质作物,因其具有高生物质生产力、适应能力强以及在低温下的光合能力。这些特性使芒草成为温带边缘土地的理想候选作物,在这些地区,产量可能会受到供水不足或过多的限制。已观察到芒草不同物种对水分胁迫的反应存在差异,这与它们的起源相关。在本研究中,我们在温室条件下比较了芒草不同物种在水分供应过多(水淹)和不足(干旱)情况下的生理和分子反应。
在干旱条件下,所有基因型均观察到显著的生物量损失。与其他物种相比,巨芒草在干旱条件下生物量产量的降低幅度低于对照。在水淹条件下,所有物种的生物量产量与对照条件相当或更好。在来自不同物种的四种芒草基因型中,参考基因组的67789个基因中有4389个(6.4%)在干旱期间差异表达。尽管差异表达基因不同,但我们观察到在干旱胁迫期间,芒草不同物种中相同的生物学过程受到调控。上调的差异表达基因显著参与蔗糖和淀粉代谢、氧化还原以及水和甘油稳态及通道活性。淀粉代谢酶BAM和蜡质GBSS-I的多个拷贝在所有芒草基因型的干旱胁迫中均强烈上调,并且12种水通道蛋白(PIP1、PIP2和NIP2)在不同基因型的干旱胁迫中也上调。
在干旱胁迫期间,不同物种的芒草基因型表现出不同的表型反应,这支持了遗传适应性的差异。差异表达基因数量少且在水淹条件下生物量产量较高,这支持了芒草在水淹土地上的应用。干旱期间受调控的分子过程在芒草不同物种中是共享的,并且与已知在模式生物干旱胁迫期间至关重要的功能类别一致。然而,受调控基因的差异可能与多倍性和杂种优势相关,这突出了探索其多样性用于育种的价值。