Interfaculty Institute of Microbiology and Infection Medicine, University of Tübingen, Tübingen, Germany.
Chemical Biology of Carbohydrates, Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research (HZI), Saarbrücken, Germany; Deutsches Zentrum für Infektionsforschung (DZIF), Standort Hannover-Braunschweig, Germany; Department of Chemistry, Saarland University, Saarbrücken, Germany.
J Biol Chem. 2021 Jan-Jun;296:100519. doi: 10.1016/j.jbc.2021.100519. Epub 2021 Mar 5.
Endo-β-N-acetylmuramidases, commonly known as lysozymes, are well-characterized antimicrobial enzymes that catalyze an endo-lytic cleavage of peptidoglycan; i.e., they hydrolyze the β-1,4-glycosidic bonds connecting N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc). In contrast, little is known about exo-β-N-acetylmuramidases, which catalyze an exo-lytic cleavage of β-1,4-MurNAc entities from the non-reducing ends of peptidoglycan chains. Such an enzyme was identified earlier in the bacterium Bacillus subtilis, but the corresponding gene has remained unknown so far. We now report that ybbC of B. subtilis, renamed namZ, encodes the reported exo-β-N-acetylmuramidase. A ΔnamZ mutant accumulated specific cell wall fragments and showed growth defects under starvation conditions, indicating a role of NamZ in cell wall turnover and recycling. Recombinant NamZ protein specifically hydrolyzed the artificial substrate para-nitrophenyl β-MurNAc and the peptidoglycan-derived disaccharide MurNAc-β-1,4-GlcNAc. Together with the exo-β-N-acetylglucosaminidase NagZ and the exo-muramoyl-l-alanine amidase AmiE, NamZ degraded intact peptidoglycan by sequential hydrolysis from the non-reducing ends. A structure model of NamZ, built on the basis of two crystal structures of putative orthologs from Bacteroides fragilis, revealed a two-domain structure including a Rossmann-fold-like domain that constitutes a unique glycosidase fold. Thus, NamZ, a member of the DUF1343 protein family of unknown function, is now classified as the founding member of a new family of glycosidases (CAZy GH171; www.cazy.org/GH171.html). NamZ-like peptidoglycan hexosaminidases are mainly present in the phylum Bacteroidetes and less frequently found in individual genomes within Firmicutes (Bacilli, Clostridia), Actinobacteria, and γ-proteobacteria.
内-β-N-乙酰胞壁质酶,通常被称为溶菌酶,是一种特征明确的抗菌酶,能够催化肽聚糖的内裂解;也就是说,它们水解将 N-乙酰胞壁酸 (MurNAc) 和 N-乙酰葡萄糖胺 (GlcNAc) 连接起来的β-1,4-糖苷键。相比之下,人们对内-β-N-乙酰胞壁质酶知之甚少,这种酶能够从肽聚糖链的非还原端催化β-1,4-MurNAc 实体的外裂解。这种酶在芽孢杆菌属细菌中早些时候被鉴定出来,但迄今为止,相应的基因仍然未知。我们现在报告称,芽孢杆菌属的 ybbC 被重新命名为 namZ,它编码报道的外-β-N-乙酰胞壁质酶。ΔnamZ 突变体积累了特定的细胞壁片段,并在饥饿条件下表现出生长缺陷,表明 NamZ 在细胞壁周转和再循环中发挥作用。重组 NamZ 蛋白特异性水解人工底物对硝基苯-β-MurNAc 和肽聚糖衍生的二糖 MurNAc-β-1,4-GlcNAc。与外-β-N-乙酰氨基葡萄糖苷酶 NagZ 和外胞壁酰-L-丙氨酸酰胺酶 AmiE 一起,NamZ 通过从非还原端顺序水解来降解完整的肽聚糖。基于来自脆弱拟杆菌的两个假定同源物的晶体结构构建的 NamZ 结构模型揭示了一种包括 Rossmann 折叠样结构域的两结构域结构,该结构域构成了独特的糖苷酶折叠。因此,属于未知功能的 DUF1343 蛋白家族的 NamZ 现在被归类为新糖苷酶家族(CAZY GH171;www.cazy.org/GH171.html)的创始成员。类似 NamZ 的肽聚糖己糖胺酶主要存在于拟杆菌门中,在厚壁菌门(芽孢杆菌、梭菌)、放线菌和γ-变形菌的个别基因组中较少发现。