Suppr超能文献

基于加权基因共表达网络分析的冠心病关键基因鉴定及其与免疫浸润的相关性。

Identification of key genes in coronary artery disease: an integrative approach based on weighted gene co-expression network analysis and their correlation with immune infiltration.

机构信息

Fourth Affiliated Hospital of China Medical University, Huanggu, Shenyang 110032, Liaoning, China.

出版信息

Aging (Albany NY). 2021 Mar 3;13(6):8306-8319. doi: 10.18632/aging.202638.

Abstract

This study aimed to identify key genes related to coronary artery disease (CAD) and its association with immune cells infiltration. GSE20680 and GSE20681 were downloaded from GEO. We identified red and pink modules in WGCNA analysis and found 104 genes in these two modules. Next, least absolute shrinkage and selection operator (LASSO) logistic regression was used to screen and verify the diagnostic markers of CAD. We identified ASCC2, LRRC18, and SLC25A37 as the key genes in CAD diagnosis. We further studied the immune cells infiltration in CAD patients with CIBERSORT, and the correlation between key genes and infiltrating immune cells was analyzed. We also found immune cells, including macrophages M0, mast cells resting and T cells CD8, were associated with ASCC2, LRRC18 and SLC25A37. Gene enrichment analysis indicated that these genes mainly enriched in apoptotic signaling pathway for biological pathway analysis, riboflavin metabolism for KEGG analysis. The diagnostic efficiency of these key genes measured by AUC in the training set, testing set and validation cohort was 0.92, 0.96 and 0.83, respectively. In conclusion, ASCC2, LRRC18 and SLC25A37 can be used as diagnostic markers of CAD, and immune cell infiltration plays an important role in the onset and development of CAD.

摘要

本研究旨在鉴定与冠状动脉疾病(CAD)相关的关键基因及其与免疫细胞浸润的关系。从 GEO 下载了 GSE20680 和 GSE20681。我们在 WGCNA 分析中鉴定了红色和粉色模块,并在这两个模块中找到了 104 个基因。接下来,使用最小绝对收缩和选择算子(LASSO)逻辑回归筛选和验证 CAD 的诊断标志物。我们鉴定出 ASCC2、LRRC18 和 SLC25A37 是 CAD 诊断的关键基因。我们进一步使用 CIBERSORT 研究了 CAD 患者的免疫细胞浸润,并分析了关键基因与浸润免疫细胞的相关性。我们还发现与 ASCC2、LRRC18 和 SLC25A37 相关的免疫细胞包括巨噬细胞 M0、静止肥大细胞和 T 细胞 CD8。基因富集分析表明,这些基因主要富集在凋亡信号通路的生物通路分析中,KEGG 分析中的核黄素代谢。这些关键基因在训练集、测试集和验证队列中的 AUC 测量的诊断效率分别为 0.92、0.96 和 0.83。总之,ASCC2、LRRC18 和 SLC25A37 可以作为 CAD 的诊断标志物,免疫细胞浸润在 CAD 的发生和发展中起着重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1533/8034924/75b22d6db2b5/aging-13-202638-g001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验